Molecular-clock methods for estimating evolutionary rates and timescales von Ho, Simon Y. W., Duchêne, Sebastián

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Relaxed phylogenetics and dating with confidence von Drummond, Alexei J, Ho, Simon Y W, Phillips, Matthew J, Rambaut, Andrew

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The effect of inappropriate calibration: three case studies in molecular ecology von Ho, Simon Y W, Saarma, Urmas, Barnett, Ross, Haile, James, Shapiro, Beth

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Testing the Impact of Calibration on Molecular Divergence Times Using a Fossil-Rich Group: The Case of Nothofagus (Fagales) von Sauquet, Hervé, Ho, Simon Y. W, Gandolfo, Maria A, Jordan, Gregory J, Wilf, Peter, Cantrill, David J, Bayly, Michael J, Bromham, Lindell, Brown, Gillian K, Carpenter, Raymond J, Lee, Daphne M, Murphy, Daniel J, Sniderman, J. M. Kale, Udovicic, Frank

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Time‐dependent estimates of molecular evolutionary rates: evidence and causes von Ho, Simon Y. W, Duchêne, Sebastián, Molak, Martyna, Shapiro, Beth

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Turnip mosaic potyvirus probably first spread to Eurasian brassica crops from wild orchids about 1000 years ago von Nguyen, Huy D, Tomitaka, Yasuhiro, Ho, Simon Y W, Duchêne, Sebastián, Vetten, Heinrich-Josef, Lesemann, Dietrich, Walsh, John A, Gibbs, Adrian J, Ohshima, Kazusato

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The global spread of hepatitis C virus 1a and 1b: a phylodynamic and phylogeographic analysis von Magiorkinis, Gkikas, Magiorkinis, Emmanouil, Paraskevis, Dimitrios, Ho, Simon Y W, Shapiro, Beth, Pybus, Oliver G, Allain, Jean-Pierre, Hatzakis, Angelos

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The impact of modelling rate heterogeneity among sites on phylogenetic estimates of intraspecific evolutionary rates and timescales von Jia, Fangzhi, Lo, Nathan, Ho, Simon Y W

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Comparison of Methods for Molecular Species Delimitation Across a Range of Speciation Scenarios von Luo, Arong, Ling, Cheng, Ho, Simon Y. W., Zhu, Chao-Dong

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Adaptive radiation of chemosymbiotic deep-sea mussels von Lorion, Julien, Kiel, Steffen, Faure, Baptiste, Kawato, Masaru, Ho, Simon Y. W., Marshall, Bruce, Tsuchida, Shinji, Miyazaki, Jun-Ichi, Fujiwara, Yoshihiro

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The temporal evolution and global spread of Cauliflower mosaic virus, a plant pararetrovirus von Yasaka, Ryosuke, Nguyen, Huy D, Ho, Simon Y W, Duchêne, Sebastián, Korkmaz, Savas, Katis, Nikolaos, Takahashi, Hideki, Gibbs, Adrian J, Ohshima, Kazusato

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Simulating and detecting autocorrelation of molecular evolutionary rates among lineages von Ho, Simon Y. W., Duchêne, Sebastián, Duchêne, David

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Skyline-plot methods for estimating demographic history from nucleotide sequences von HO, SIMON Y.W, SHAPIRO, BETH

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Diversification and Demography of the Oriental Garden Lizard (Calotes versicolor) on Hainan Island and the Adjacent Mainland von Huang, Yong, Guo, Xianguang, Ho, Simon Y W, Shi, Haitao, Li, Jiatang, Li, Jun, Cai, Bo, Wang, Yuezhao

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Mutation rate is linked to diversification in birds von Lanfear, Robert, Ho, Simon Y. W., Love, Dominic, Bromham, Lindell, Lynch, Michael

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Comment on “Phylogenomics resolves the timing and pattern of insect evolution” von Tong, K. Jun, Duchêne, Sebastián, Ho, Simon Y. W., Lo, Nathan

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EasyCodeML: A visual tool for analysis of selection using CodeML von Gao, Fangluan, Chen, Chengjie, Arab, Daej A., Du, Zhenguo, He, Yehua, Ho, Simon Y. W.

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Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses von Lanfear, Robert, Calcott, Brett, Ho, Simon Y W, Guindon, Stephane

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Biogeographic calibrations for the molecular clock von Ho, Simon Y. W., Tong, K. Jun, Foster, Charles S. P., Ritchie, Andrew M., Lo, Nathan, Crisp, Michael D.

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American mastodon mitochondrial genomes suggest multiple dispersal events in response to Pleistocene climate oscillations von Karpinski, Emil, Hackenberger, Dirk, Zazula, Grant, Widga, Chris, Duggan, Ana T., Golding, G. Brian, Kuch, Melanie, Klunk, Jennifer, Jass, Christopher N., Groves, Pam, Druckenmiller, Patrick, Schubert, Blaine W., Arroyo-Cabrales, Joaquin, Simpson, William F., Hoganson, John W., Fisher, Daniel C., Ho, Simon Y. W., MacPhee, Ross D. E., Poinar, Hendrik N.

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