Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors von Plass, Mireya, Rasmussen, Simon H, Krogh, Anders

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Emergence and Spread of Basal Lineages of Yersinia pestis during the Neolithic Decline von Rascovan, Nicolás, Sjögren, Karl-Göran, Kristiansen, Kristian, Nielsen, Rasmus, Willerslev, Eske, Desnues, Christelle, Rasmussen, Simon

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Leveraging haplotype information in heritability estimation and polygenic prediction von Meisner, Jonas, Benros, Michael Eriksen, Rasmussen, Simon

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A G(enomic)P(ositioning)S(ystem) for Plant RNAPII Transcription von Leng, Xueyuan, Thomas, Quentin, Rasmussen, Simon Horskjær, Marquardt, Sebastian

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Transcriptome Responses to Combinations of Stresses in Arabidopsis von Rasmussen, Simon, Barah, Pankaj, Suarez-Rodriguez, Maria Cristina, Bressendorff, Simon, Friis, Pia, Costantino, Paolo, Bones, Atle M., Nielsen, Henrik Bjørn, Mundy, John

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Double-Stranded RNA Is Produced by Positive-Strand RNA Viruses and DNA Viruses but Not in Detectable Amounts by Negative-Strand RNA Viruses von WEBER, Friedemann, WAGNER, Valentina, RASMUSSEN, Simon B, HARTMANN, Rune, PALUDAN, Søren R

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Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria von LARSEN, Mette V, COSENTINO, Salvatore, LUND, Ole, RASMUSSEN, Simon, FRIIS, Carsten, HASMAN, Henrik, LYKKE MARVIG, Rasmus, JELSBAK, Lars, SICHERITZ-PONTEN, Thomas, USSERY, David W, AARESTRUP, Frank M

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Transcriptome analysis of root‐knot nematode (Meloidogyne incognita)‐infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of... von Shukla, Neha, Yadav, Rachita, Kaur, Pritam, Rasmussen, Simon, Goel, Shailendra, Agarwal, Manu, Jagannath, Arun, Gupta, Ramneek, Kumar, Amar

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Metagenomic species profiling using universal phylogenetic marker genes von Sunagawa, Shinichi, Mende, Daniel R, Zeller, Georg, Izquierdo-Carrasco, Fernando, Berger, Simon A, Kultima, Jens Roat, Coelho, Luis Pedro, Arumugam, Manimozhiyan, Tap, Julien, Nielsen, Henrik Bjørn, Rasmussen, Simon, Brunak, Søren, Pedersen, Oluf, Guarner, Francisco, de Vos, Willem M, Wang, Jun, Li, Junhua, Doré, Joël, Ehrlich, S Dusko, Stamatakis, Alexandros, Bork, Peer

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Benchmarking of methods for genomic taxonomy von Larsen, Mette V, Cosentino, Salvatore, Lukjancenko, Oksana, Saputra, Dhany, Rasmussen, Simon, Hasman, Henrik, Sicheritz-Pontén, Thomas, Aarestrup, Frank M, Ussery, David W, Lund, Ole

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The genome of a Late Pleistocene human from a Clovis burial site in western Montana von Rasmussen, Morten, Anzick, Sarah L., Waters, Michael R., Skoglund, Pontus, DeGiorgio, Michael, Stafford, Thomas W., Rasmussen, Simon, Moltke, Ida, Albrechtsen, Anders, Doyle, Shane M., Poznik, G. David, Gudmundsdottir, Valborg, Yadav, Rachita, Malaspinas, Anna-Sapfo, V, Samuel Stockton White, Allentoft, Morten E., Cornejo, Omar E., Tambets, Kristiina, Eriksson, Anders, Heintzman, Peter D., Karmin, Monika, Korneliussen, Thorfinn Sand, Meltzer, David J., Pierre, Tracey L., Stenderup, Jesper, Saag, Lauri, Warmuth, Vera M., Lopes, Margarida C., Malhi, Ripan S., Brunak, Søren, Sicheritz-Ponten, Thomas, Barnes, Ian, Collins, Matthew, Orlando, Ludovic, Balloux, Francois, Manica, Andrea, Gupta, Ramneek, Metspalu, Mait, Bustamante, Carlos D., Jakobsson, Mattias, Nielsen, Rasmus, Willerslev, Eske

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Taxometer: Improving taxonomic classification of metagenomics contigs von Kutuzova, Svetlana, Nielsen, Mads, Piera, Pau, Nissen, Jakob Nybo, Rasmussen, Simon

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Genome binning of viral entities from bulk metagenomics data von Johansen, Joachim, Plichta, Damian R., Nissen, Jakob Nybo, Jespersen, Marie Louise, Shah, Shiraz A., Deng, Ling, Stokholm, Jakob, Bisgaard, Hans, Nielsen, Dennis Sandris, Sørensen, Søren J., Rasmussen, Simon

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Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers von Sikora, Martin, Seguin-Orlando, Andaine, Sousa, Vitor C., Albrechtsen, Anders, Korneliussen, Thorfinn, Ko, Amy, Rasmussen, Simon, Dupanloup, Isabelle, Nigst, Philip R., Bosch, Marjolein D., Renaud, Gabriel, Allentoft, Morten E., Margaryan, Ashot, Vasilyev, Sergey V., Veselovskaya, Elizaveta V., Borutskaya, Svetlana B., Deviese, Thibaut, Comeskey, Dan, Higham, Tom, Manica, Andrea, Foley, Robert, Meltzer, David J., Nielsen, Rasmus, Excoffier, Laurent, Lahr, Marta Mirazon, Orlando, Ludovic, Willerslev, Eske

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Machine learning and deep learning applications in microbiome research von Hernández Medina, Ricardo, Kutuzova, Svetlana, Nielsen, Knud Nor, Johansen, Joachim, Hansen, Lars Hestbjerg, Nielsen, Mads, Rasmussen, Simon

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Proteasomal degradation of herpes simplex virus capsids in macrophages releases DNA to the cytosol for recognition by DNA sensors von Horan, Kristy A, Hansen, Kathrine, Jakobsen, Martin R, Holm, Christian K, Søby, Stine, Unterholzner, Leonie, Thompson, Mikayla, West, John A, Iversen, Marie B, Rasmussen, Simon B, Ellermann-Eriksen, Svend, Kurt-Jones, Evelyn, Landolfo, Santo, Damania, Blossom, Melchjorsen, Jesper, Bowie, Andrew G, Fitzgerald, Katherine A, Paludan, Søren R

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Predictors of DAPSA28 remission in patients with psoriatic arthritis initiating a first TNF inhibitor: results from 13 European registries von Linde, Louise, Ørnbjerg, Lykke M, Georgiadis, Stylianos, H Rasmussen, Simon, Lindström, Ulf, Askling, Johan, Michelsen, Brigitte, Di Giuseppe, Daniela, Wallman, Johan K, Gudbjornsson, Bjorn, Love, Thorvardur Jon, Nordström, Dan C, Yli-Kerttula, Timo, Nekvindová, Lucie, Vencovský, Jiří, Iannone, Florenzo, Cauli, Alberto, Loft, Anne Gitte, Glintborg, Bente, Laas, Karin, Rotar, Ziga, Tomšič, Matija, Macfarlane, Gary J, Möller, Burkhard, van de Sande, Marleen, Codreanu, Catalin, Nissen, Michael J, Birlik, Merih, Erten, Sukran, Santos, Maria J, Vieira-Sousa, Elsa, Hetland, Merete L, Østergaard, Mikkel

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Imputation of label-free quantitative mass spectrometry-based proteomics data using self-supervised deep learning von Webel, Henry, Niu, Lili, Nielsen, Annelaura Bach, Locard-Paulet, Marie, Mann, Matthias, Jensen, Lars Juhl, Rasmussen, Simon

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Self-protection strategies and health behaviour in patients with inflammatory rheumatic diseases during the COVID-19 pandemic: results and predictors in more than 12 000 patients w... von Glintborg, Bente, Jensen, Dorte Vendelbo, Engel, Sara, Terslev, Lene, Pfeiffer Jensen, Mogens, Hendricks, Oliver, Østergaard, Mikkel, Horskjær Rasmussen, Simon, Adelsten, Thomas, Colic, Ada, Danebod, Kamilla, Kildemand, Malene, Loft, Anne Gitte, Munk, Heidi Lausten, Pedersen, Jens Kristian, Østgård, René Drage, Møller Sørensen, Christian, Krogh, Niels Steen, Agerbo, Jette, Ziegler, Connie, Hetland, Merete Lund

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Rare truncating variants in the sarcomeric protein titin associate with familial and early-onset atrial fibrillation von Ahlberg, Gustav, Refsgaard, Lena, Lundegaard, Pia R., Andreasen, Laura, Ranthe, Mattis F., Linscheid, Nora, Nielsen, Jonas B., Melbye, Mads, Haunsø, Stig, Sajadieh, Ahmad, Camp, Lu, Olesen, Søren-Peter, Rasmussen, Simon, Lundby, Alicia, Ellinor, Patrick T., Holst, Anders G., Svendsen, Jesper H., Olesen, Morten S.

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