Testing the advantages and disadvantages of short- and long- read eukaryotic metagenomics using simulated reads von Pearman, William S., Freed, Nikki E., Silander, Olin K.

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Automated Reconstruction of Whole-Genome Phylogenies from Short-Sequence Reads von Bertels, Frederic, Silander, Olin K., Pachkov, Mikhail, Rainey, Paul B., van Nimwegen, Erik

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A genome-wide analysis of promoter-mediated phenotypic noise in Escherichia coli von Silander, Olin K, Nikolic, Nela, Zaslaver, Alon, Bren, Anat, Kikoin, Ilya, Alon, Uri, Ackermann, Martin

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Monitoring single-cell gene regulation under dynamically controllable conditions with integrated microfluidics and software von Kaiser, Matthias, Jug, Florian, Julou, Thomas, Deshpande, Siddharth, Pfohl, Thomas, Silander, Olin K., Myers, Gene, van Nimwegen, Erik

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predictability of molecular evolution during functional innovation von Blank, Diana, Wolf, Luise, Ackermann, Martin, Silander, Olin K.

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Understanding the evolutionary fate of finite populations: the dynamics of mutational effects von Silander, Olin K, Tenaillon, Olivier, Chao, Lin

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Growth condition-dependent differences in methylation imply transiently differentiated DNA methylation states in Escherichia coli von Breckell, Georgia L, Silander, Olin K

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Expression noise facilitates the evolution of gene regulation von Wolf, Luise, Silander, Olin K, van Nimwegen, Erik

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Patterns of evolutionary conservation of essential genes correlate with their compensability von Bergmiller, Tobias, Ackermann, Martin, Silander, Olin K

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Use of Genomics to Track Coronavirus Disease Outbreaks, New Zealand von Geoghegan, Jemma L., Douglas, Jordan, Ren, Xiaoyun, Storey, Matthew, Hadfield, James, Silander, Olin K., Freed, Nikki E., Jelley, Lauren, Jefferies, Sarah, Sherwood, Jillian, Paine, Shevaun, Huang, Sue, Sporle, Andrew, Baker, Michael G., Murdoch, David R., Drummond, Alexei J., Welch, David, Simpson, Colin R., French, Nigel, Holmes, Edward C., de Ligt, Joep

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A simple screen to identify promoters conferring high levels of phenotypic noise von Freed, Nikki E, Silander, Olin K, Stecher, Bärbel, Böhm, Alex, Hardt, Wolf-Dietrich, Ackermann, Martin

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Efficiency of the synthetic self‐splicing RiboJ ribozyme is robust to cis‐ and trans‐changes in genetic background von Vlková, Markéta, Morampalli, Bhargava Reddy, Silander, Olin K.

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Concordant geographic and genetic structure revealed by genotyping‐by‐sequencing in a New Zealand marine isopod von Pearman, William S., Wells, Sarah J., Silander, Olin K., Freed, Nikki E., Dale, James

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Long-read sequencing reveals atypical mitochondrial genome structure in a New Zealand marine isopod von Pearman, William S, Wells, Sarah J, Dale, James, Silander, Olin K, Freed, Nikki E

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Correlated substitutions reveal SARS-like coronaviruses recombine frequently with a diverse set of structured gene pools von Preska Steinberg, Asher, Silander, Olin K, Kussell, Edo

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Rapid and inexpensive whole-genome sequencing of SARS-CoV-2 using 1200 bp tiled amplicons and Oxford Nanopore Rapid Barcoding von Freed, Nikki E, Vlková, Markéta, Faisal, Muhammad B, Silander, Olin K

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Quantifying organismal complexity using a population genetic approach von Tenaillon, Olivier, Silander, Olin K, Uzan, Jean-Philippe, Chao, Lin

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Quantitative analysis of persister fractions suggests different mechanisms of formation among environmental isolates of E. coli von Hofsteenge, Niels, van Nimwegen, Erik, Silander, Olin K

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Gene regulation in Escherichiacoli is commonly selected for both high plasticity and low noise von Vlková, Markéta, Silander, Olin K.

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pyRforest: a comprehensive R package for genomic data analysis featuring scikit-learn Random Forests in R von Kolisnik, Tyler, Keshavarz-Rahaghi, Faeze, Purcell, Rachel V, Smith, Adam N H, Silander, Olin K

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