Testing the advantages and disadvantages of short- and long- read eukaryotic metagenomics using simulated reads von Pearman, William S, Freed, Nikki E, Silander, Olin K

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A genome-wide analysis of promoter-mediated phenotypic noise in Escherichia coli von Silander, Olin K, Nikolic, Nela, Zaslaver, Alon, Bren, Anat, Kikoin, Ilya, Alon, Uri, Ackermann, Martin

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Automated Reconstruction of Whole-Genome Phylogenies from Short-Sequence Reads von Bertels, Frederic, Silander, Olin K., Pachkov, Mikhail, Rainey, Paul B., van Nimwegen, Erik

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Monitoring single-cell gene regulation under dynamically controllable conditions with integrated microfluidics and software von Kaiser, Matthias, Jug, Florian, Julou, Thomas, Deshpande, Siddharth, Pfohl, Thomas, Silander, Olin K., Myers, Gene, van Nimwegen, Erik

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Patterns of evolutionary conservation of essential genes correlate with their compensability von Bergmiller, Tobias, Ackermann, Martin, Silander, Olin K

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Understanding the evolutionary fate of finite populations: the dynamics of mutational effects von Silander, Olin K, Tenaillon, Olivier, Chao, Lin

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predictability of molecular evolution during functional innovation von Blank, Diana, Wolf, Luise, Ackermann, Martin, Silander, Olin K.

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Growth condition-dependent differences in methylation imply transiently differentiated DNA methylation states in Escherichia coli von Breckell, Georgia L, Silander, Olin K

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Expression noise facilitates the evolution of gene regulation von Wolf, Luise, Silander, Olin K, van Nimwegen, Erik

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Use of Genomics to Track Coronavirus Disease Outbreaks, New Zealand von Geoghegan, Jemma L, Douglas, Jordan, Ren, Xiaoyun, Storey, Matthew, Hadfield, James, Silander, Olin K, Freed, Nikki E, Jelley, Lauren, Jefferies, Sarah, Sherwood, Jillian, Paine, Shevaun, Huang, Sue, Sporle, Andrew, Baker, Michael G, Murdoch, David R, Drummond, Alexei J, Welch, David, Simpson, Colin R, French, Nigel, Holmes, Edward C, de Ligt, Joep

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Bacterial lipopolysaccharide modulates immune response in the colorectal tumor microenvironment von Sulit, A. K., Daigneault, M., Allen-Vercoe, E., Silander, O. K., Hock, B., McKenzie, J., Pearson, J., Frizelle, F. A., Schmeier, S., Purcell, R.

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A simple screen to identify promoters conferring high levels of phenotypic noise von Freed, Nikki E, Silander, Olin K, Stecher, Bärbel, Böhm, Alex, Hardt, Wolf-Dietrich, Ackermann, Martin

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Concordant geographic and genetic structure revealed by genotyping‐by‐sequencing in a New Zealand marine isopod von Pearman, William S., Wells, Sarah J., Silander, Olin K., Freed, Nikki E., Dale, James

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Efficiency of the synthetic self‐splicing RiboJ ribozyme is robust to cis‐ and trans‐changes in genetic background von Vlková, Markéta, Morampalli, Bhargava Reddy, Silander, Olin K.

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Epistasis between deleterious mutations and the evolution of recombination von Kouyos, Roger D., Silander, Olin K., Bonhoeffer, Sebastian

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Long-read sequencing reveals atypical mitochondrial genome structure in a New Zealand marine isopod von Pearman, William S, Wells, Sarah J, Dale, James, Silander, Olin K, Freed, Nikki E

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Correlated substitutions reveal SARS-like coronaviruses recombine frequently with a diverse set of structured gene pools von Preska Steinberg, Asher, Silander, Olin K, Kussell, Edo

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Rapid and inexpensive whole-genome sequencing of SARS-CoV-2 using 1200 bp tiled amplicons and Oxford Nanopore Rapid Barcoding von Freed, Nikki E, Vlková, Markéta, Faisal, Muhammad B, Silander, Olin K

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Replication of restless legs syndrome loci in three European populations von Kemlink, D, Polo, O, Frauscher, B, Gschliesser, V, Högl, B, Poewe, W, Vodicka, P, Vavrova, J, Sonka, K, Nevsimalova, S, Schormair, B, Lichtner, P, Silander, K, Peltonen, L, Gieger, C, Wichmann, H E, Zimprich, A, Roeske, D, Müller-Myhsok, B, Meitinger, T, Winkelmann, J

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Quantifying organismal complexity using a population genetic approach von Tenaillon, Olivier, Silander, Olin K, Uzan, Jean-Philippe, Chao, Lin

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