Backmapping triangulated surfaces to coarse-grained membrane models von Pezeshkian, Weria, König, Melanie, Wassenaar, Tsjerk A., Marrink, Siewert J.

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Membrane thickness, lipid phase and sterol type are determining factors in the permeability of membranes to small solutes von Frallicciardi, Jacopo, Melcr, Josef, Siginou, Pareskevi, Marrink, Siewert J., Poolman, Bert

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Protein–ligand binding with the coarse-grained Martini model von Souza, Paulo C. T., Thallmair, Sebastian, Conflitti, Paolo, Ramírez-Palacios, Carlos, Alessandri, Riccardo, Raniolo, Stefano, Limongelli, Vittorio, Marrink, Siewert J.

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Molecular dynamics simulations in photosynthesis von Liguori, Nicoletta, Croce, Roberta, Marrink, Siewert J., Thallmair, Sebastian

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Polarizable water model for the coarse-grained MARTINI force field von Yesylevskyy, Semen O, Schäfer, Lars V, Sengupta, Durba, Marrink, Siewert J

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Polyply; a python suite for facilitating simulations of macromolecules and nanomaterials von Grünewald, Fabian, Alessandri, Riccardo, Kroon, Peter C., Monticelli, Luca, Souza, Paulo C. T., Marrink, Siewert J.

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Martini straight: Boosting performance using a shorter cutoff and GPUs von de Jong, Djurre H., Baoukina, Svetlana, Ingólfsson, Helgi I., Marrink, Siewert J.

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Martini 3: a general purpose force field for coarse-grained molecular dynamics von Souza, Paulo C. T., Alessandri, Riccardo, Barnoud, Jonathan, Thallmair, Sebastian, Faustino, Ignacio, Grünewald, Fabian, Patmanidis, Ilias, Abdizadeh, Haleh, Bruininks, Bart M. H., Wassenaar, Tsjerk A., Kroon, Peter C., Melcr, Josef, Nieto, Vincent, Corradi, Valentina, Khan, Hanif M., Domański, Jan, Javanainen, Matti, Martinez-Seara, Hector, Reuter, Nathalie, Best, Robert B., Vattulainen, Ilpo, Monticelli, Luca, Periole, Xavier, Tieleman, D. Peter, de Vries, Alex H., Marrink, Siewert J.

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N-type organic thermoelectrics: demonstration of ZT > 0.3 von Liu, Jian, van der Zee, Bas, Alessandri, Riccardo, Sami, Selim, Dong, Jingjin, Nugraha, Mohamad I., Barker, Alex J., Rousseva, Sylvia, Qiu, Li, Qiu, Xinkai, Klasen, Nathalie, Chiechi, Ryan C., Baran, Derya, Caironi, Mario, Anthopoulos, Thomas D., Portale, Giuseppe, Havenith, Remco W. A., Marrink, Siewert J., Hummelen, Jan C., Koster, L. Jan Anton

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Ceramides bind VDAC2 to trigger mitochondrial apoptosis von Dadsena, Shashank, Bockelmann, Svenja, Mina, John G. M., Hassan, Dina G., Korneev, Sergei, Razzera, Guilherme, Jahn, Helene, Niekamp, Patrick, Müller, Dagmar, Schneider, Markus, Tafesse, Fikadu G., Marrink, Siewert J., Melo, Manuel N., Holthuis, Joost C. M.

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Molecular Mechanism of Lipid Nanodisk Formation by Styrene-Maleic Acid Copolymers von Xue, Minmin, Cheng, Lisheng, Faustino, Ignacio, Guo, Wanlin, Marrink, Siewert J.

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Computational Lipidomics of the Neuronal Plasma Membrane von Ingólfsson, Helgi I., Carpenter, Timothy S., Bhatia, Harsh, Bremer, Peer-Timo, Marrink, Siewert J., Lightstone, Felice C.

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Martini Coarse-Grained Force Field: Extension to RNA von Uusitalo, Jaakko J., Ingólfsson, Helgi I., Marrink, Siewert J., Faustino, Ignacio

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Going Backward: A Flexible Geometric Approach to Reverse Transformation from Coarse Grained to Atomistic Models von Wassenaar, Tsjerk A, Pluhackova, Kristyna, Böckmann, Rainer A, Marrink, Siewert J, Tieleman, D. Peter

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Titratable Martini model for constant pH simulations von Grünewald, Fabian, Souza, Paulo C. T., Abdizadeh, Haleh, Barnoud, Jonathan, de Vries, Alex H., Marrink, Siewert J.

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molecular face of lipid rafts in model membranes von Risselada, H. Jelger, Marrink, Siewert J

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From light-harvesting to photoprotection: structural basis of the dynamic switch of the major antenna complex of plants (LHCII) von Liguori, Nicoletta, Periole, Xavier, Marrink, Siewert J., Croce, Roberta

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Enhancing Molecular n‐Type Doping of Donor–Acceptor Copolymers by Tailoring Side Chains von Liu, Jian, Qiu, Li, Alessandri, Riccardo, Qiu, Xinkai, Portale, Giuseppe, Dong, JingJin, Talsma, Wytse, Ye, Gang, Sengrian, Aprizal Akbar, Souza, Paulo C. T., Loi, Maria Antonietta, Chiechi, Ryan C., Marrink, Siewert J., Hummelen, Jan C., Koster, L. Jan Anton

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Improved Parameters for the Martini Coarse-Grained Protein Force Field von de Jong, Djurre H, Singh, Gurpreet, Bennett, W. F. Drew, Arnarez, Clement, Wassenaar, Tsjerk A, Schäfer, Lars V, Periole, Xavier, Tieleman, D. Peter, Marrink, Siewert J

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Coupled binding mechanism of three sodium ions and aspartate in the glutamate transporter homologue GltTk von Guskov, Albert, Jensen, Sonja, Faustino, Ignacio, Marrink, Siewert J., Slotboom, Dirk Jan

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