Linking Human Milk Oligosaccharides, Infant Fecal Community Types, and Later Risk To Require Antibiotics von Berger, Bernard, Porta, Nadine, Foata, Francis, Grathwohl, Dominik, Delley, Michele, Moine, Deborah, Charpagne, Aline, Siegwald, Lea, Descombes, Patrick, Alliet, Philippe, Puccio, Giuseppe, Steenhout, Philippe, Mercenier, Annick, Sprenger, Norbert

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Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics von Siegwald, Léa, Touzet, Hélène, Lemoine, Yves, Hot, David, Audebert, Christophe, Caboche, Ségolène

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An Extensively Hydrolyzed Formula Supplemented with Two Human Milk Oligosaccharides Modifies the Fecal Microbiome and Metabolome in Infants with Cow's Milk Protein Allergy von Boulangé, Claire L, Pedersen, Helle K, Martin, Francois-Pierre, Siegwald, Léa, Pallejà Caro, Albert, Eklund, Aron C, Jia, Wei, Zhang, Huizhen, Berger, Bernard, Sprenger, Norbert, Heine, Ralf G, Cinnamon Study Investigator Group

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A distinct clade of Bifidobacterium longum in the gut of Bangladeshi children thrives during weaning von Vatanen, Tommi, Ang, Qi Yan, Siegwald, Léa, Sarker, Shafiqul Alam, Le Roy, Caroline I., Duboux, Stéphane, Delannoy-Bruno, Omar, Ngom-Bru, Catherine, Boulangé, Claire L., Stražar, Martin, Avila-Pacheco, Julian, Deik, Amy, Pierce, Kerry, Bullock, Kevin, Dennis, Courtney, Sultana, Shamima, Sayed, Sharika, Rahman, Mahbubar, Ahmed, Tahmeed, Modesto, Monica, Mattarelli, Paola, Clish, Clary B., Vlamakis, Hera, Plichta, Damian R., Sakwinska, Olga, Xavier, Ramnik J.

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Application of Computational Data Modeling to a Large-Scale Population Cohort Assists the Discovery of Inositol as a Strain-Specific Substrate for Faecalibacterium prausnitzii von Dogra, Shaillay Kumar, Dardinier, Adrien, Mainardi, Fabio, Siegwald, Léa, Bartova, Simona, Le Roy, Caroline, Chou, Chieh Jason

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Informed interpretation of metagenomic data by StrainPhlAn enables strain retention analyses of the upper airway microbiome von Mostacci, Nadja, Wüthrich, Tsering Monika, Siegwald, Léa, Kieser, Silas, Steinberg, Ruth, Sakwinska, Olga, Latzin, Philipp, Korten, Insa, Hilty, Markus

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Human milk oligosaccharides alleviate stress-induced visceral hypersensitivity and associated microbiota dysbiosis von Ferrier, Laurent, Eutamène, Hélène, Siegwald, Léa, Marquard, Andrea M., Tondereau, Valerie, Chevalier, Julien, Jacot, Guillaume E., Favre, Laurent, Theodorou, Vassilia, Vicario, Maria, Rytz, Andreas, Bergonzelli, Gabriela, Garcia-Rodenas, Clara L.

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The Influence of FUT2 and FUT3 Polymorphisms and Nasopharyngeal Microbiome on Respiratory Infections in Breastfed Bangladeshi Infants from the Microbiota and Health Study von Binia, Aristea, Siegwald, Lea, Sultana, Shamima, Shevlyakova, Maya, Lefebvre, Gregory, Foata, Francis, Combremont, Severine, Charpagne, Aline, Vidal, Karine, Sprenger, Norbert, Rahman, Mahbubar, Palleja, Albert, Eklund, Aron C., Nielsen, Henrik Bjorn, Brussow, Harald, Sarker, Shafiqul Alam, Sakwinska, Olga

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Modelling the Impact of Chronic Cigarette Smoke Exposure in Obese Mice: Metabolic, Pulmonary, Intestinal, and Cardiac Issues von Dubois-Deruy, Emilie, Remy, Gaelle, Alard, Jeanne, Kervoaze, Gwenola, Chwastyniak, Maggy, Baron, Morgane, Beury, Delphine, Siegwald, Lea, Caboche, Segolene, Hot, David, Gosset, Philippe, Grangette, Corinne, Pinet, Florence, Wolowczuk, Isabelle, Pichavant, Muriel

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The Impact of Bioinformatics Pipelines on Microbiota Studies: Does the Analytical “Microscope” Affect the Biological Interpretation? von Siegwald, Léa, Caboche, Ségolène, Even, Gaël, Viscogliosi, Eric, Audebert, Christophe, Chabé, Magali

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Erratum: Rémy et al. Modelling the Impact of Chronic Cigarette Smoke Exposure in Obese Mice: Metabolic, Pulmonary, Intestinal, and Cardiac Issues. Nutrients 2020, 12, 827 von Rémy, Gaëlle, Dubois-Deruy, Emilie, Alard, Jeanne, Kervoaze, Gwenola, Chwastyniak, Maggy, Baron, Morgane, Beury, Delphine, Siegwald, Léa, Caboche, Ségolène, Hot, David, Gosset, Philippe, Grangette, Corinne, Pinet, Florence, Wolowczuk, Isabelle, Pichavant, Muriel

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Targeted metagenomic sequencing data of human gut microbiota associated with Blastocystis colonization von Siegwald, Léa, Audebert, Christophe, Even, Gaël, Viscogliosi, Eric, Caboche, Ségolène, Chabé, Magali

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Modelling the Impact of Chronic Cigarette Smoke Exposure in Obese Mice: Metabolic, Pulmonary, Intestinal, and Cardiac Issues (vol 12, 827, 2020) von Remy, Gaelle, Dubois-Deruy, Emilie, Alard, Jeanne, Kervoaze, Gwenola, Chwastyniak, Maggy, Baron, Morgane, Beury, Delphine, Siegwald, Lea, Caboche, Segolene, Hot, David, Gosset, Philippe, Grangette, Corinne, Pinet, Florence, Wolowczuk, Isabelle, Pichavant, Muriel

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Application of Computational Data Modeling to a Large-Scale Population Cohort Assists the Discovery of Inositol as a Strain-Specific Substrate for IFaecalibacterium prausnitzii/I von Dogra, Shaillay Kumar, Dardinier, Adrien, Mainardi, Fabio, Siegwald, Léa, Bartova, Simona, Le Roy, Caroline, Chou, Chieh Jason

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Solutions d'amélioration des études de métagénomique ciblée von Siegwald, Léa

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BIFIDOBACTERIUM LONGUM TRANSITIONAL MICROORGANISMS, COMPOSITIONS AND USES THEREOF von DUBOUX, STEPHANE, VATANEN, TOMMI, NGOM-BRU, CATHERINE, SIEGWALD, LEA, SAKWINSKA, OLGA, VLAMAKIS, HERA, XAVIER, RAMNIK

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BIFIDOBACTERIUM LONGUM TRANSITIONAL MICROORGANISMS, COMPOSITIONS AND USES THEREOF von Vatanen, Tommi, Ngom-Bru, Catherine, Sakwinska, Olga, Duboux, Stéphane, Vlamakis, Hera, Xavier, Ramnik, Siegwald, Léa

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BIFIDOBACTERIUM LONGUM TRANSITIONAL MICROORGANISMS, COMPOSITIONS AND USES THEREOF von VATANEN, Tommi, NGOM-BRU, Catherine, SIEGWALD, Léa, XAVIER, Ramnik, DUBOUX, Stéphane, VLAMAKIS, Hera, SAKWINSKA, Olga

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Normalized_global BIOM file von Even, Gaël, Siegwald, Léa

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OTU_count_tables tsv file von Even, Gaël, Siegwald, Léa

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