ECO, the Evidence & Conclusion Ontology: community standard for evidence information von Giglio, Michelle, Tauber, Rebecca, Nadendla, Suvarna, Munro, James, Olley, Dustin, Ball, Shoshannah, Mitraka, Elvira, Schriml, Lynn M, Gaudet, Pascale, Hobbs, Elizabeth T, Erill, Ivan, Siegele, Deborah A, Hu, James C, Mungall, Chris, Chibucos, Marcus C

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Heterogeneous Distribution of Proton Motive Force in Nonheritable Antibiotic Resistance von Lee, Annie H, Gupta, Rachit, Nguyen, Hong Nhi, Schmitz, Isabella R, Siegele, Deborah A, Lele, Pushkar P

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Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO) von Ramsey, Jolene, McIntosh, Brenley, Renfro, Daniel, Aleksander, Suzanne A., LaBonte, Sandra, Ross, Curtis, Zweifel, Adrienne E., Liles, Nathan, Farrar, Shabnam, Gill, Jason J., Erill, Ivan, Ades, Sarah, Berardini, Tanya Z., Bennett, Jennifer A., Brady, Siobhan, Britton, Robert, Carbon, Seth, Caruso, Steven M., Clements, Dave, Dalia, Ritu, Defelice, Meredith, Doyle, Erin L., Friedberg, Iddo, Gurney, Susan M. R., Hughes, Lee, Johnson, Allison, Kowalski, Jason M., Li, Donghui, Lovering, Ruth C., Mans, Tamara L., McCarthy, Fiona, Moore, Sean D., Murphy, Rebecca, Paustian, Timothy D., Perdue, Sarah, Peterson, Celeste N., Pruss, Birgit M., Saha, Margaret S., Sheehy, Robert R., Tansey, John T., Temple, Louise, Thorman, Alexander William, Trevino, Saul, Vollmer, Amy Cheng, Walbot, Virginia, Willey, Joanne, Siegele, Deborah A., Hu, James C.

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Insights from the reanalysis of high-throughput chemical genomics data for Escherichia coli K-12 von Wu, Peter I-Fan, Ross, Curtis, Siegele, Deborah A., Hu, James C.

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Global Analysis of Escherichia coli Gene Expression during the Acetate-Induced Acid Tolerance Response von Arnold, C N, McElhanon, J, Lee, A, Leonhart, R, Siegele, D A

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Phenotype annotation with the ontology of microbial phenotypes (OMP) von Siegele, Deborah A, LaBonte, Sandra A, Wu, Peter I-Fan, Chibucos, Marcus C, Nandendla, Suvarna, Giglio, Michelle G, Hu, James C

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Use of a Fluorescence-Based Assay To Measure Escherichia coli Membrane Potential Changes in High Throughput von Hudson, M. Ashley, Siegele, Deborah A., Lockless, Steve W.

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Gene Expression from Plasmids Containing the araBAD Promoter at Subsaturating Inducer Concentrations Represents Mixed Populations von Siegele, Deborah A., Hu, James C.

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PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools von Hu, James C, Sherlock, Gavin, Siegele, Deborah A, Aleksander, Suzanne A, Ball, Catherine A, Demeter, Janos, Gouni, Sushanth, Holland, Timothy A, Karp, Peter D, Lewis, John E, Liles, Nathan M, McIntosh, Brenley K, Mi, Huaiyu, Muruganujan, Anushya, Wymore, Farrell, Thomas, Paul D, Altman, Tomer

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Heat shock transcription factor σ32 co-opts the signal recognition particle to regulate protein homeostasis in E. coli von Lim, Bentley, Miyazaki, Ryoji, Neher, Saskia, Siegele, Deborah A, Ito, Koreaki, Walter, Peter, Akiyama, Yoshinori, Yura, Takashi, Gross, Carol A

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Bacteria-to-Human Protein Networks Reveal Origins of Endogenous DNA Damage von Xia, Jun, Chiu, Li-Ya, Nehring, Ralf B., Bravo Núñez, María Angélica, Mei, Qian, Perez, Mercedes, Zhai, Yin, Fitzgerald, Devon M., Pribis, John P., Wang, Yumeng, Hu, Chenyue W., Powell, Reid T., LaBonte, Sandra A., Jalali, Ali, Matadamas Guzmán, Meztli L., Lentzsch, Alfred M., Szafran, Adam T., Joshi, Mohan C., Richters, Megan, Gibson, Janet L., Frisch, Ryan L., Hastings, P.J., Bates, David, Queitsch, Christine, Hilsenbeck, Susan G., Coarfa, Cristian, Hu, James C., Siegele, Deborah A., Scott, Kenneth L., Liang, Han, Mancini, Michael A., Herman, Christophe, Miller, Kyle M., Rosenberg, Susan M.

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Universal stress proteins in Escherichia coli von Siegele, Deborah A

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What we can learn about Escherichia coli through application of Gene Ontology von Hu, James C, Karp, Peter D, Keseler, Ingrid M, Krummenacker, Markus, Siegele, Deborah A

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High-throughput, quantitative analyses of genetic interactions in E. coli von Collins, Sean R, Nichols, Robert J, Shales, Michael, Braberg, Hannes, Typas, Athanasios, Mori, Hirotada, Gross, Carol A, Weissman, Jonathan S, Lim, Bentley, Siegele, Deborah A, Yamamoto, Natsuko, Krogan, Nevan J, Takeuchi, Rikiya, Wanner, Barry L

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An ontology for microbial phenotypes von Chibucos, Marcus C, Zweifel, Adrienne E, Herrera, Jonathan C, Meza, William, Eslamfam, Shabnam, Uetz, Peter, Siegele, Deborah A, Hu, James C, Giglio, Michelle G

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The Gene Ontology resource: enriching a GOld mine von Carbon, Seth, Douglass, Eric, Good, Benjamin M., Unni, Deepak R., Harris, Nomi L., Mungall, Christopher J., Basu, Siddartha, Chisholm, Rex L., Dodson, Robert J., Hartline, Eric, Fey, Petra, Thomas, Paul D., Albou, Laurent-Philippe, Ebert, Dustin, Kesling, Michael J., Mi, Huaiyu, Muruganujan, Anushya, Huang, Xiaosong, Mushayahama, Tremayne, LaBonte, Sandra A., Siegele, Deborah A., Antonazzo, Giulia, Attrill, Helen, Brown, Nick H., Garapati, Phani, Marygold, Steven J., Trovisco, Vitor, Dos Santos, Gil, Falls, Kathleen, Tabone, Christopher, Zhou, Pinglei, Goodman, Joshua L., Strelets, Victor B., Thurmond, Jim, Garmiri, Penelope, Ishtiaq, Rizwan, Rodriguez-Lopez, Milagros, Acencio, Marcio L., Kuiper, Martin, Laegreid, Astrid, Logie, Colin, Lovering, Ruth C., Kramarz, Barbara, Saverimuttu, Shirin C. C., Pinheiro, Sandra M., Gunn, Heather, Su, Renzhi, Thurlow, Katherine E., Chibucos, Marcus, Giglio, Michelle, Nadendla, Suvarna, Munro, James, Jackson, Rebecca, Duesbury, Margaret J., Del-Toro, Noemi, Meldal, Birgit H. M., Paneerselvam, Kalpana, Perfetto, Livia, Porras, Pablo, Orchard, Sandra, Shrivastava, Anjali, Chang, Hsin-Yu, Finn, Robert Daniel, Mitchell, Alexander Lawson, Rawlings, Neil David, Richardson, Lorna, Sangrador-Vegas, Amaia, Blake, Judith A., Christie, Karen R., Dolan, Mary E., Drabkin, Harold J., Hill, David P., Ni, Li, Sitnikov, Dmitry M., Harris, Midori A., Oliver, Stephen G., Rutherford, Kim, Wood, Valerie, Hayles, Jaqueline, Bahler, Jurg, Bolton, Elizabeth R., De Pons, Jeffery L., Dwinell, Melinda R., Hayman, G. Thomas, Kaldunski, Mary L., Kwitek, Anne E., Laulederkind, Stanley J. F., Plasterer, Cody, Tutaj, Marek A., Vedi, Mahima, Wang, Shur-Jen, D'Eustachio, Peter, Matthews, Lisa, Balhoff, James P., Aleksander, Suzi A., Alexander, Michael J., Cherry, J. Michael, Engel, Stacia R., Gondwe, Felix, Karra, Kalpana

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GONUTS: the Gene Ontology Normal Usage Tracking System von Renfro, Daniel P., McIntosh, Brenley K., Venkatraman, Anand, Siegele, Deborah A., Hu, James C.

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EcoliWiki: a wiki-based community resource for Escherichia coli von McIntosh, Brenley K., Renfro, Daniel P., Knapp, Gwendowlyn S., Lairikyengbam, Chanchala R., Liles, Nathan M., Niu, Lili, Supak, Amanda M., Venkatraman, Anand, Zweifel, Adrienne E., Siegele, Deborah A., Hu, James C.

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A previously uncharacterized gene, yjfO (bsmA), influences Escherichia coli biofilm formation and stress response von Weber, Mary M, French, Christa L, Barnes, Mary B, Siegele, Deborah A, McLean, Robert J. C

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Mutations in the flhD gene of Escherichia coli K-12 do not cause the reported effect on cell division von Siegele, Deborah A, Bain, Sherrie, Mao, Weimin

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