Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering von Hackl, Matthias, Jakobi, Tobias, Blom, Jochen, Doppmeier, Daniel, Brinkrolf, Karina, Szczepanowski, Rafael, Bernhart, Stephan H., Siederdissen, Christian Höner zu, Bort, Juan A. Hernandez, Wieser, Matthias, Kunert, Renate, Jeffs, Simon, Hofacker, Ivo L., Goesmann, Alexander, Pühler, Alfred, Borth, Nicole, Grillari, Johannes

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A folding algorithm for extended RNA secondary structures von zu Siederdissen, Christian Höner, Bernhart, Stephan H., Stadler, Peter F., Hofacker, Ivo L.

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microRNA-122 target sites in the hepatitis C virus RNA NS5B coding region and 3′ untranslated region: function in replication and influence of RNA secondary structure von Gerresheim, Gesche K., Dünnes, Nadia, Nieder-Röhrmann, Anika, Shalamova, Lyudmila A., Fricke, Markus, Hofacker, Ivo, Höner zu Siederdissen, Christian, Marz, Manja, Niepmann, Michael

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Selection Pressures on RNA Sequences and Structures von Nowick, Katja, Walter Costa, Maria Beatriz, Höner zu Siederdissen, Christian, Stadler, Peter F

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flowEMMi: an automated model-based clustering tool for microbial cytometric data von Ludwig, Joachim, Zu Siederdissen, Christian Höner, Liu, Zishu, Stadler, Peter F, Müller, Susann

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SSS-test: a novel test for detecting positive selection on RNA secondary structure von Walter Costa, Maria Beatriz, Höner Zu Siederdissen, Christian, Dunjić, Marko, Stadler, Peter F, Nowick, Katja

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Animal snoRNAs and scaRNAs with exceptional structures von Marz, Manja, Gruber, Andreas R., Höner zu Siederdissen, Christian, Amman, Fabian, Badelt, Stefan, Bartschat, Sebastian, Bernhart, Stephan H., Beyer, Wolfgang, Kehr, Stephanie, Lorenz, Ronny, Tanzer, Andrea, Yusuf, Dilmurat, Tafer, Hakim, Hofacker, Ivo L., Stadler, Peter F.

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Automatic, fast, hierarchical, and non-overlapping gating of flow cytometric data with flowEMMi v2 von Bruckmann, Carmen, Müller, Susann, Höner zu Siederdissen, Christian

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Expansion of gene clusters, circular orders, and the shortest Hamiltonian path problem von Prohaska, Sonja J., Berkemer, Sarah J., Gärtner, Fabian, Gatter, Thomas, Retzlaff, Nancy, Höner zu Siederdissen, Christian, Stadler, Peter F.

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RNA 3D Modules in Genome-Wide Predictions of RNA 2D Structure von Theis, Corinna, Zirbel, Craig L, Zu Siederdissen, Christian Höner, Anthon, Christian, Hofacker, Ivo L, Nielsen, Henrik, Gorodkin, Jan

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Product Grammars for Alignment and Folding von Honer zu Siederdissen, Christian, Hofacker, Ivo L., Stadler, Peter F.

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Nanopore sequencing enables novel detection of deuterium incorporation in DNA von Höner zu Siederdissen, Christian, Spangenberg, Jannes, Bisdorf, Kevin, Krautwurst, Sebastian, Srivastava, Akash, Marz, Manja, Taubert, Martin

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Accurate annotation of protein-coding genes in mitochondrial genomes von Al Arab, Marwa, Höner zu Siederdissen, Christian, Tout, Kifah, Sahyoun, Abdullah H., Stadler, Peter F., Bernt, Matthias

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2D Meets 4G: G-Quadruplexes in RNA Secondary Structure Prediction von Lorenz, Ronny, Bernhart, Stephan H., Jing Qin, Siederdissen, Christian Honer Zu, Tanzer, Andrea, Amman, Fabian, Hofacker, Ivo L., Stadler, Peter F.

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CMCompare webserver: comparing RNA families via covariance models von Eggenhofer, Florian, Hofacker, Ivo L, Höner Zu Siederdissen, Christian

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Automated identification of RNA 3D modules with discriminative power in RNA structural alignments von Theis, Corinna, Höner Zu Siederdissen, Christian, Hofacker, Ivo L, Gorodkin, Jan

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Accuracy of RNA Structure Prediction Depends on the Pseudoknot Grammar von Eggers, Dustyn, Höner zu Siederdissen, Christian, Stadler, Peter F.

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Semantics and Ambiguity of Stochastic RNA Family Models von Giegerich, R, Höener zu Siederdissen, Christian

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Additional file 3 of Decoding cell-type contributions to the cfRNA transcriptomic landscape of liver cancer von Safrastyan, Aram, zu Siederdissen, Christian Höner, Wollny, Damian

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Additional file 2 of Decoding cell-type contributions to the cfRNA transcriptomic landscape of liver cancer von Safrastyan, Aram, zu Siederdissen, Christian Höner, Wollny, Damian

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