Vaccine effectiveness against SARS-CoV-2 infection or COVID-19 hospitalization with the Alpha, Delta, or Omicron SARS-CoV-2 variant: A nationwide Danish cohort study von Gram, Mie Agermose, Emborg, Hanne-Dorthe, Schelde, Astrid Blicher, Friis, Nikolaj Ulrik, Nielsen, Katrine Finderup, Moustsen-Helms, Ida Rask, Legarth, Rebecca, Lam, Janni Uyen Hoa, Chaine, Manon, Malik, Aisha Zahoor, Rasmussen, Morten, Fonager, Jannik, Sieber, Raphael Niklaus, Stegger, Marc, Ethelberg, Steen, Valentiner-Branth, Palle, Hansen, Christian Holm

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Virus isolation and neutralisation of SARS-CoV-2 variants BA.2.86 and EG.5.1 von Lassaunière, Ria, Polacek, Charlotta, Utko, Magdalena, Sørensen, Karina M, Baig, Sharmin, Ellegaard, Kirsten, Escobar-Herrera, Leandro A, Fomsgaard, Anders, Spiess, Katja, Gunalan, Vithiagaran, Bennedbæk, Marc, Fonager, Jannik, Schwartz, Olivier, Planas, Delphine, Simon-Lorière, Etienne, Schneider, Uffe V, Sieber, Raphael N, Stegger, Marc, Nielsen, Lene, Hoppe, Morten, Krause, Tyra G, Ullum, Henrik, Jokelainen, Pikka, Rasmussen, Morten

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Epidemiological characterisation of the first 785 SARS-CoV-2 Omicron variant cases in Denmark, December 2021 von Espenhain, Laura, Funk, Tjede, Overvad, Maria, Edslev, Sofie Marie, Fonager, Jannik, Ingham, Anna Cäcilia, Rasmussen, Morten, Madsen, Sarah Leth, Espersen, Caroline Hjorth, Sieber, Raphael N, Stegger, Marc, Gunalan, Vithiagaran, Wilkowski, Bartlomiej, Larsen, Nicolai Balle, Legarth, Rebecca, Cohen, Arieh Sierra, Nielsen, Finn, Lam, Janni Uyen Hoa, Lavik, Kjetil Erdogan, Karakis, Marianne, Spiess, Katja, Marving, Ellinor, Nielsen, Christian, Wiid Svarrer, Christina, Bybjerg-Grauholm, Jonas, Olsen, Stefan Schytte, Jensen, Anders, Krause, Tyra Grove, Müller, Luise

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Drivers and Dynamics of Methicillin-Resistant Livestock-Associated Staphylococcus aureus CC398 in Pigs and Humans in Denmark von Sieber, Raphael N, Skov, Robert L, Nielsen, Jens, Schulz, Jana, Price, Lance B, Aarestrup, Frank M, Larsen, Anders R, Stegger, Marc, Larsen, Jesper

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Emergence of Livestock-Associated Methicillin-Resistant Staphylococcus aureus Bloodstream Infections in Denmark von Larsen, Jesper, Petersen, Andrease, Larsen, Anders R., Sieber, Raphael N., Stegger, Marc, Koch, Anders, Aarestrup, Frank M., Price, Lance B., Skov, Robert L.

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Antimicrobial Resistance and Virulence Gene Profiles of Methicillin-Resistant and -Susceptible Staphylococcus aureus From Food Products in Denmark von Li, Heng, Andersen, Paal Skytt, Stegger, Marc, Sieber, Raphael N, Ingmer, Hanne, Staubrand, Nicholas, Dalsgaard, Anders, Leisner, Jørgen J

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Staphylococcal Phages Adapt to New Hosts by Extensive Attachment Site Variability von Leinweber, Helena, Sieber, Raphael N, Larsen, Jesper, Stegger, Marc, Ingmer, Hanne

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Phage-Mediated Immune Evasion and Transmission of Livestock-Associated Methicillin-Resistant Staphylococcus aureus in Humans von Sieber, Raphael N, Urth, Tinna R, Petersen, Andreas, Møller, Camilla H, Price, Lance B, Skov, Robert L, Larsen, Anders R, Stegger, Marc, Larsen, Jesper

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Horizontal transfer and phylogenetic distribution of the immune evasion factor tarP von Gerlach, David, Sieber, Raphael N., Larsen, Jesper, Krusche, Janes, De Castro, Cristina, Baumann, Juliane, Molinaro, Antonio, Peschel, Andreas

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Local and Transboundary Transmissions of Methicillin-Resistant Staphylococcus aureus Sequence Type 398 through Pig Trading von Pirolo, Mattia, Sieber, Raphael N, Moodley, Arshnee, Visaggio, Daniela, Artuso, Irene, Gioffrè, Angela, Casalinuovo, Francesco, Spatari, Giovanna, Guardabassi, Luca, Stegger, Marc, Visca, Paolo

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LA-MRSA CC398 in Dairy Cattle and Veal Calf Farms Indicates Spillover From Pig Production von Hansen, Julie E, Ronco, Troels, Stegger, Marc, Sieber, Raphael N, Fertner, Mette E, Martin, Henrik L, Farre, Michael, Toft, Nils, Larsen, Anders R, Pedersen, Karl

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Horses in Denmark Are a Reservoir of Diverse Clones of Methicillin-Resistant and -Susceptible Staphylococcus aureus von Islam, Md Zohorul, Espinosa-Gongora, Carmen, Damborg, Peter, Sieber, Raphael N, Munk, Rikke, Husted, Louise, Moodley, Arshnee, Skov, Robert, Larsen, Jesper, Guardabassi, Luca

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Household transmission of the SARS-CoV-2 Omicron variant in Denmark von Lyngse, Frederik Plesner, Mortensen, Laust Hvas, Denwood, Matthew J., Christiansen, Lasse Engbo, Møller, Camilla Holten, Skov, Robert Leo, Spiess, Katja, Fomsgaard, Anders, Lassaunière, Ria, Rasmussen, Morten, Stegger, Marc, Nielsen, Claus, Sieber, Raphael Niklaus, Cohen, Arieh Sierra, Møller, Frederik Trier, Overvad, Maria, Mølbak, Kåre, Krause, Tyra Grove, Kirkeby, Carsten Thure

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Spread of LA-MRSA CC398 in Danish mink (Neovison vison) and mink farm workers von Hansen, Julie E., Stegger, Marc, Pedersen, Karl, Sieber, Raphael N., Larsen, Jesper, Larsen, Gitte, Lilje, Berit, Chriél, Mariann, Andersen, Paal S., Larsen, Anders R.

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Household transmission of SARS-CoV-2 Omicron variant of concern subvariants BA.1 and BA.2 in Denmark von Lyngse, Frederik Plesner, Kirkeby, Carsten Thure, Denwood, Matthew, Christiansen, Lasse Engbo, Mølbak, Kåre, Møller, Camilla Holten, Skov, Robert Leo, Krause, Tyra Grove, Rasmussen, Morten, Sieber, Raphael Niklaus, Johannesen, Thor Bech, Lillebaek, Troels, Fonager, Jannik, Fomsgaard, Anders, Møller, Frederik Trier, Stegger, Marc, Overvad, Maria, Spiess, Katja, Mortensen, Laust Hvas

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Comparative genomics of Staphylococcus aureus strains from wild birds and pig farms elucidates levels of mobilomes, antibiotic pressure and host adaptation von Abdullahi, Idris Nasir, Lozano, Carmen, Zarazaga, Myriam, Simón, Carmen, Höfle, Ursula, Sieber, Raphael N., Latorre-Fernández, Javier, Stegger, Marc, Torres, Carmen

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A snapshot of diversity: Intraclonal variation of Escherichia coli clones as commensals and pathogens von Stegger, Marc, Leihof, Rikke Fleron, Baig, Sharmin, Sieber, Raphael N., Thingholm, Karen Rønø, Marvig, Rasmus L., Frimodt-Møller, Niels, Nielsen, Karen Leth

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Genome investigations show host adaptation and transmission of LA-MRSA CC398 from pigs into Danish healthcare institutions von Sieber, Raphael Niklaus, Larsen, Anders Rhod, Urth, Tinna Ravnholt, Iversen, Søren, Møller, Camilla Holten, Skov, Robert Leo, Larsen, Jesper, Stegger, Marc

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Effect of vaccination on household transmission of SARS-CoV-2 Delta variant of concern von Lyngse, Frederik Plesner, Mølbak, Kåre, Denwood, Matt, Christiansen, Lasse Engbo, Møller, Camilla Holten, Rasmussen, Morten, Cohen, Arieh Sierra, Stegger, Marc, Fonager, Jannik, Sieber, Raphael Niklaus, Ellegaard, Kirsten Maren, Nielsen, Claus, Kirkeby, Carsten Thure

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Fluoroquinolone resistance does not facilitate phage Φ13 integration or excision in Staphylococcus aureus von Leinweber, Helena, Sieber, Raphael N, Bojer, Martin S, Larsen, Jesper, Ingmer, Hanne

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