RNA modifications detection by comparative Nanopore direct RNA sequencing von Leger, Adrien, Amaral, Paulo P., Pandolfini, Luca, Capitanchik, Charlotte, Capraro, Federica, Miano, Valentina, Migliori, Valentina, Toolan-Kerr, Patrick, Sideri, Theodora, Enright, Anton J., Tzelepis, Konstantinos, van Werven, Folkert J., Luscombe, Nicholas M., Barbieri, Isaia, Ule, Jernej, Fitzgerald, Tomas, Birney, Ewan, Leonardi, Tommaso, Kouzarides, Tony

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Multiplexed profiling facilitates robust m6A quantification at site, gene and sample resolution von Dierks, David, Garcia-Campos, Miguel Angel, Uzonyi, Anna, Safra, Modi, Edelheit, Sarit, Rossi, Alice, Sideri, Theodora, Varier, Radhika A., Brandis, Alexander, Stelzer, Yonatan, van Werven, Folkert, Scherz-Shouval, Ruth, Schwartz, Schraga

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The essential iron-sulfur protein Rli1 is an important target accounting for inhibition of cell growth by reactive oxygen species von Alhebshi, Alawiah, Sideri, Theodora C, Holland, Sara L, Avery, Simon V

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The yeast RNA methylation complex consists of conserved yet reconfigured components with m6A-dependent and independent roles von Ensinck, Imke, Maman, Alexander, Albihlal, Waleed S, Lassandro, Michelangelo, Salzano, Giulia, Sideri, Theodora, Howell, Steven A, Calvani, Enrica, Patel, Harshil, Bushkin, Guy, Ralser, Markus, Snijders, Ambrosius P, Skehel, Mark, Casañal, Ana, Schwartz, Schraga, van Werven, Folkert J

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N6 -methyladenosine (m6A) reader Pho92 is recruited co-transcriptionally and couples translation to mRNA decay to promote meiotic fitness in yeast von Varier, Radhika A, Sideri, Theodora, Capitanchik, Charlotte, Manova, Zornitsa, Calvani, Enrica, Rossi, Alice, Edupuganti, Raghu R, Ensinck, Imke, Chan, Vincent W C, Patel, Harshil, Kirkpatrick, Joanna, Faull, Peter, Snijders, Ambrosius P, Vermeulen, Michiel, Ralser, Markus, Ule, Jernej, Luscombe, Nicholas M, van Werven, Folkert J

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Arsenite interferes with protein folding and triggers formation of protein aggregates in yeast von Jacobson, Therese, Navarrete, Clara, Sharma, Sandeep K, Sideri, Theodora C, Ibstedt, Sebastian, Priya, Smriti, Grant, Chris M, Christen, Philipp, Goloubinoff, Pierre, Tamás, Markus J

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Ribosome-associated peroxiredoxins suppress oxidative stress—induced de novo formation of the [PSI⁺] prion in yeast von Sideri, Theodora C., Stojanovski, Klement, Tuite, Mick F., Grant, Chris M., Lindquist, Susan

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Methionine Oxidation of Sup35 Protein Induces Formation of the [PSI+] Prion in a Yeast Peroxiredoxin Mutant von Sideri, Theodora C., Koloteva-Levine, Nadejda, Tuite, Mick F., Grant, Chris M.

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Oxidative protein damage causes chromium toxicity in yeast von Sumner, Edward R, Shanmuganathan, Anupama, Sideri, Theodora C, Willetts, Sylvia A, Houghton, John E, Avery, Simon V

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Global analysis of protein aggregation in yeast during physiological conditions and arsenite stress von Ibstedt, Sebastian, Sideri, Theodora C, Grant, Chris M, Tamás, Markus J

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Parallel profiling of fission yeast deletion mutants for proliferation and for lifespan during long-term quiescence von Sideri, Theodora, Rallis, Charalampos, Bitton, Danny A, Lages, Bruno M, Suo, Fang, Rodríguez-López, María, Du, Li-Lin, Bähler, Jürg

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Methionine sulphoxide reductases protect iron-sulphur clusters from oxidative inactivation in yeast von Sideri, Theodora C, Willetts, Sylvia A, Avery, Simon V

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The copper transport-associated protein Ctr4 can form prion-like epigenetic determinants in Schizosaccharomyces pombe von Sideri, Theodora, Yashiroda, Yoko, Ellis, David A, Rodríguez-López, María, Yoshida, Minoru, Tuite, Mick F, Bähler, Jürg

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m6A-ELISA, a simple method for quantifying N6 -methyladenosine from mRNA populations von Ensinck, Imke, Sideri, Theodora, Modic, Miha, Capitanchik, Charlotte, Vivori, Claudia, Toolan-Kerr, Patrick, van Werven, Folkert J

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Multi-signal regulation of the GSK-3β homolog Rim11 controls meiosis entry in budding yeast von Kociemba, Johanna, Jørgensen, Andreas Christ Sølvsten, Tadić, Nika, Harris, Anthony, Sideri, Theodora, Chan, Wei Yee, Ibrahim, Fairouz, Ünal, Elçin, Skehel, Mark, Shahrezaei, Vahid, Argüello-Miranda, Orlando, van Werven, Folkert Jacobus

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The yeast RNA methylation complex consists of conserved yet reconfigured components with m6A-dependent and independent roles von Ensinck, Imke, Maman, Alexander, Albihlal, Waleed S, Lassandro, Michelangelo, Salzano, Giulia, Sideri, Theodora, Howell, Steven A, Calvani, Enrica, Patel, Harshil, Bushkin, Guy, Ralser, Markus, Snijders, Ambrosius P, Skehel, Mark, Casañal, Ana, Schwartz, Schraga, van Werven, Folkert J

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RSC and GRFs confer promoter directionality by restricting divergent noncoding transcription von Wu, Andrew Ck, Vivori, Claudia, Patel, Harshil, Sideri, Theodora, Moretto, Fabien, van Werven, Folkert J

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Application of the comprehensive set of heterozygous yeast deletion mutants to elucidate the molecular basis of cellular chromium toxicity von Holland, Sara, Lodwig, Emma, Sideri, Theodora, Reader, Tom, Clarke, Ian, Gkargkas, Konstantinos, Hoyle, David C, Delneri, Daniela, Oliver, Stephen G, Avery, Simon V

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The genomic and phenotypic diversity of Schizosaccharomyces pombe von Jeffares, Daniel C, Rallis, C, Rieux, Adrien, Speed, Doug, Převorovský, Martin, Mourier, Tobias, Marsellach, Francesc X, Iqbal, Zamin, Lau, Winston, Cheng, Tammy M K, Pracana, Rodrigo, Mülleder, Michael, Lawson, Jonathan L D, Chessel, Anatole, Bala, Sendu, Hellenthal, Garrett, O'Fallon, Brendan, Keane, Thomas, Simpson, Jared T, Bischof, Leanne, Tomiczek, Bartlomiej, Bitton, Danny A, Sideri, Theodora, Codlin, Sandra, Hellberg, Josephine E E U, van Trigt, Laurent, Jeffery, Linda, Li, Juan-Juan, Atkinson, Sophie, Thodberg, Malte, Febrer, Melanie, McLay, Kirsten, Drou, Nizar, Brown, William, Hayles, Jacqueline, Salas, Rafael E Carazo, Ralser, Markus, Maniatis, Nikolas, Balding, David J, Balloux, Francois, Durbin, Richard, Bähler, Jürg

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Parallel Profiling of Fission Yeast Deletion Mutants for Proliferation and for Lifespan During Long-Term Quiescence von Sideri, Theodora, Rallis, C, Bitton, Danny A, Lages, Bruno M, Suo, Fang, Rodríguez-López, María, Du, Li-Lin, Bähler, Jürg

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