Single‐tube library preparation for degraded DNA von Carøe, Christian, Gopalakrishnan, Shyam, Vinner, Lasse, Mak, Sarah S. T., Sinding, Mikkel Holger S., Samaniego, José A., Wales, Nathan, Sicheritz‐Pontén, Thomas, Gilbert, M. Thomas P., Johnston, Susan

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Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira von Palomo, Alejandro, Pedersen, Anders G., Fowler, S. Jane, Dechesne, Arnaud, Sicheritz-Pontén, Thomas, Smets, Barth F.

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Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria von LARSEN, Mette V, COSENTINO, Salvatore, LUND, Ole, RASMUSSEN, Simon, FRIIS, Carsten, HASMAN, Henrik, LYKKE MARVIG, Rasmus, JELSBAK, Lars, SICHERITZ-PONTEN, Thomas, USSERY, David W, AARESTRUP, Frank M

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Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum) von Sánchez‐Barreiro, Fátima, Gopalakrishnan, Shyam, Ramos‐Madrigal, Jazmín, Westbury, Michael V., Manuel, Marc, Margaryan, Ashot, Ciucani, Marta M., Vieira, Filipe G., Patramanis, Yannis, Kalthoff, Daniela C., Timmons, Zena, Sicheritz‐Pontén, Thomas, Dalén, Love, Ryder, Oliver A., Zhang, Guojie, Marquès‐Bonet, Tomás, Moodley, Yoshan, Gilbert, M. Thomas P.

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Benchmarking of methods for genomic taxonomy von Larsen, Mette V, Cosentino, Salvatore, Lukjancenko, Oksana, Saputra, Dhany, Rasmussen, Simon, Hasman, Henrik, Sicheritz-Pontén, Thomas, Aarestrup, Frank M, Ussery, David W, Lund, Ole

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PhageLeads: Rapid Assessment of Phage Therapeutic Suitability Using an Ensemble Machine Learning Approach von Yukgehnaish, Kumarasan, Rajandas, Heera, Parimannan, Sivachandran, Manickam, Ravichandran, Marimuthu, Kasi, Petersen, Bent, Clokie, Martha R J, Millard, Andrew, Sicheritz-Pontén, Thomas

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MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads von Petersen, Thomas Nordahl, Lukjancenko, Oksana, Thomsen, Martin Christen Frølund, Maddalena Sperotto, Maria, Lund, Ole, Møller Aarestrup, Frank, Sicheritz-Pontén, Thomas

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Comprehensive blueprint of Salmonella genomic plasticity identifies hotspots for pathogenicity genes von Krishnakant Kushwaha, Simran, Wu, Yi, Leonardo Avila, Hugo, Anand, Abhirath, Sicheritz-Pontén, Thomas, Millard, Andrew, Amol Marathe, Sandhya, Nobrega, Franklin L

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Choice of bacterial DNA extraction method from fecal material influences community structure as evaluated by metagenomic analysis von Wesolowska-Andersen, Agata, Bahl, Martin Iain, Carvalho, Vera, Kristiansen, Karsten, Sicheritz-Pontén, Thomas, Gupta, Ramneek, Licht, Tine Rask

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Analysis of Selection Methods to Develop Novel Phage Therapy Cocktails Against Antimicrobial Resistant Clinical Isolates of Bacteria von Haines, Melissa E K, Hodges, Francesca E, Nale, Janet Y, Mahony, Jennifer, van Sinderen, Douwe, Kaczorowska, Joanna, Alrashid, Bandar, Akter, Mahmuda, Brown, Nathan, Sauvageau, Dominic, Sicheritz-Pontén, Thomas, Thanki, Anisha M, Millard, Andrew D, Galyov, Edouard E, Clokie, Martha R J

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Palaeogenomic insights into the origins of French grapevine diversity von Ramos-Madrigal, Jazmín, Runge, Anne Kathrine Wiborg, Bouby, Laurent, Lacombe, Thierry, Samaniego Castruita, José Alfredo, Adam-Blondon, Anne-Françoise, Figueiral, Isabel, Hallavant, Charlotte, Martínez-Zapater, José M., Schaal, Caroline, Töpfer, Reinhard, Petersen, Bent, Sicheritz-Pontén, Thomas, This, Patrice, Bacilieri, Roberto, Gilbert, M. Thomas P., Wales, Nathan

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Molecular markers for tracking the origin and worldwide distribution of invasive strains of Puccinia striiformis von Walter, Stephanie, Ali, Sajid, Kemen, Eric, Nazari, Kumarse, Bahri, Bochra A., Enjalbert, Jérôme, Hansen, Jens G., Brown, James K.M., Sicheritz‐Pontén, Thomas, Jones, Jonathan, Vallavieille‐Pope, Claude, Hovmøller, Mogens S., Justesen, Annemarie F.

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Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging von Zepeda Mendoza, Marie Lisandra, Roggenbuck, Michael, Manzano Vargas, Karla, Hansen, Lars Hestbjerg, Brunak, Søren, Gilbert, M Thomas P, Sicheritz-Pontén, Thomas

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Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance von Nordahl Petersen, Thomas, Rasmussen, Simon, Hasman, Henrik, Carøe, Christian, Bælum, Jacob, Charlotte Schultz, Anna, Bergmark, Lasse, Svendsen, Christina A., Lund, Ole, Sicheritz-Pontén, Thomas, Aarestrup, Frank M.

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Genomic and metagenomic signatures of giant viruses are ubiquitous in water samples from sewage, inland lake, waste water treatment plant, and municipal water supply in Mumbai, Ind... von Chatterjee, Anirvan, Sicheritz-Pontén, Thomas, Yadav, Rajesh, Kondabagil, Kiran

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Microbiota in foods from Inuit traditional hunting von Hauptmann, Aviaja L, Paulová, Petronela, Hansen, Lars Hestbjerg, Sicheritz-Pontén, Thomas, Mulvad, Gert, Nielsen, Dennis S

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Contamination of the Arctic reflected in microbial metagenomes from the Greenland ice sheet von Hauptmann, Aviaja L, Sicheritz-Pontén, Thomas, Cameron, Karen A, Bælum, Jacob, Plichta, Damian R, Dalgaard, Marlene, Stibal, Marek

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Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins von Diella, Francesca, Cameron, Scott, Gemünd, Christine, Linding, Rune, Via, Allegra, Kuster, Bernhard, Sicheritz-Pontén, Thomas, Blom, Nikolaj, Gibson, Toby J

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Development of a Phage Cocktail to Target Salmonella Strains Associated with Swine von Thanki, Anisha M, Clavijo, Viviana, Healy, Kit, Wilkinson, Rachael C, Sicheritz-Pontén, Thomas, Millard, Andrew D, Clokie, Martha R J

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A novel approach to probe host-pathogen interactions of bovine digital dermatitis, a model of a complex polymicrobial infection von Marcatili, Paolo, Nielsen, Martin W, Sicheritz-Pontén, Thomas, Jensen, Tim K, Schafer-Nielsen, Claus, Boye, Mette, Nielsen, Morten, Klitgaard, Kirstine

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