Ten recommendations for supporting open pathogen genomic analysis in public health von Black, Allison, MacCannell, Duncan R., Sibley, Thomas R., Bedford, Trevor

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How effective is the efficiency gap? von Sibley, Thomas Q.

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Early Detection of Covid-19 through a Citywide Pandemic Surveillance Platform von Chu, Helen Y, Englund, Janet A, Starita, Lea M, Famulare, Michael, Brandstetter, Elisabeth, Nickerson, Deborah A, Rieder, Mark J, Adler, Amanda, Lacombe, Kirsten, Kim, Ashley E, Graham, Chelsey, Logue, Jennifer, Wolf, Caitlin R, Heimonen, Jessica, McCulloch, Denise J, Han, Peter D, Sibley, Thomas R, Lee, Jover, Ilcisin, Misja, Fay, Kairsten, Burstein, Roy, Martin, Beth, Lockwood, Christina M, Thompson, Matthew, Lutz, Barry, Jackson, Michael, Hughes, James P, Boeckh, Michael, Shendure, Jay, Bedford, Trevor

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"I probably shouldn't go in today": Inequitable access to paid sick leave and its impacts on health behaviors during the emergence of COVID-19 in the Seattle area von Iwu, Chidozie D, Cox, Sarah N, Sohlberg, Sarah L, Kim, Ashley E, Logue, Jennifer, Han, Peter D, Sibley, Thomas R, Ilcisin, Misja, Fay, Kairsten A, Lee, Jover, McCulloch, Denise J, Wang, Yongzhe, Boeckh, Michael, Englund, Janet A, Starita, Lea M, Hajat, Anjum, Chu, Helen Y

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ISDB: a database toolkit for storing and analyzing viral integration site data von Sibley, Thomas R, Silberman, Evan J, Mullins, James I

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Impacts of human mobility on the citywide transmission dynamics of 18 respiratory viruses in pre- and post-COVID-19 pandemic years von Perofsky, Amanda C., Hansen, Chelsea L., Burstein, Roy, Boyle, Shanda, Prentice, Robin, Marshall, Cooper, Reinhart, David, Capodanno, Ben, Truong, Melissa, Schwabe-Fry, Kristen, Kuchta, Kayla, Pfau, Brian, Acker, Zack, Lee, Jover, Sibley, Thomas R., McDermot, Evan, Rodriguez-Salas, Leslie, Stone, Jeremy, Gamboa, Luis, Han, Peter D., Adler, Amanda, Waghmare, Alpana, Jackson, Michael L., Famulare, Michael, Shendure, Jay, Bedford, Trevor, Chu, Helen Y., Englund, Janet A., Starita, Lea M., Viboud, Cécile

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Evaluating Specimen Quality and Results from a Community-Wide, Home-Based Respiratory Surveillance Study von Kim, Ashley E., Brandstetter, Elisabeth, Wilcox, Naomi, Heimonen, Jessica, Graham, Chelsey, Han, Peter D., Starita, Lea M., McCulloch, Denise J., Casto, Amanda M., Nickerson, Deborah A., Van de Loo, Margaret M., Mooney, Jennifer, Ilcisin, Misja, Fay, Kairsten A., Lee, Jover, Sibley, Thomas R., Lyon, Victoria, Geyer, Rachel E., Thompson, Matthew, Lutz, Barry R., Rieder, Mark J., Bedford, Trevor, Boeckh, Michael, Englund, Janet A., Chu, Helen Y.

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Minority and majority pretreatment HIV-1 drug resistance associated with failure of first-line nonnucleoside reverse-transcriptase inhibitor antiretroviral therapy in Kenyan women von Milne, Ross S, Silverman, Rachel A, Beck, Ingrid A, Mckernan-Mullin, Jennifer, Deng, Wenjie, Sibley, Thomas R, Dross, Sandra, Kiarie, James N, Sakr, Samah R, Coombs, Robert W, Chung, Michael H, Frenkel, Lisa M

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Effects of weather-related social distancing on city-scale transmission of respiratory viruses: a retrospective cohort study von Jackson, Michael L., Hart, Gregory R., McCulloch, Denise J., Adler, Amanda, Brandstetter, Elisabeth, Fay, Kairsten, Han, Peter, Lacombe, Kirsten, Lee, Jover, Sibley, Thomas R., Nickerson, Deborah A., Rieder, Mark J., Starita, Lea, Englund, Janet A., Bedford, Trevor, Chu, Helen, Famulare, Michael

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The Seattle Flu Study: a multiarm community-based prospective study protocol for assessing influenza prevalence, transmission and genomic epidemiology von Chu, Helen Y, Boeckh, Michael, Englund, Janet A, Famulare, Michael, Lutz, Barry, Nickerson, Deborah A, Rieder, Mark, Starita, Lea M, Adler, Amanda, Brandstetter, Elisabeth, Frazer, Chris D, Han, Peter D, Gulati, Reena K, Hadfield, James, Jackson, Michael, Kiavand, Anahita, Kimball, Louise E, Lacombe, Kirsten, Newman, Kira, Sibley, Thomas R, Logue, Jennifer K, Lyon, Victoria Rachel, Wolf, Caitlin R, Zigman Suchsland, Monica, Shendure, Jay, Bedford, Trevor

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Joint visualization of seasonal influenza serology and phylogeny to inform vaccine composition von Lee, Jover, Hadfield, James, Black, Allison, Sibley, Thomas R, Neher, Richard A, Bedford, Trevor, Huddleston, John

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Incidence of Medically Attended Acute Respiratory Illnesses Due to Respiratory Viruses Across the Life Course During the 2018/19 Influenza Season von Jackson, Michael L, Starita, Lea, Kiniry, Erika, Phillips, C Hallie, Wellwood, Stacie, Cho, Shari, Kiavand, Anahita, Truong, Melissa, Han, Peter, Richardson, Matthew, Wolf, Caitlin R, Heimonen, Jessica, Nickerson, Deborah A, Chu, Helen Y

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Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens von Huddleston, John, Hadfield, James, Sibley, Thomas, Lee, Jover, Fay, Kairsten, Ilcisin, Misja, Harkins, Elias, Bedford, Trevor, Neher, Richard, Hodcroft, Emma

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Streptococcus pneumoniae nasal carriage patterns with and without common respiratory virus detections in households in Seattle, WA, USA before and during the COVID-19 pandemic von Bennett, Julia C, Emanuels, Anne, Heimonen, Jessica, O'Hanlon, Jessica, Hughes, James P, Han, Peter D, Chow, Eric J, Ogokeh, Constance E, Rolfes, Melissa A, Lockwood, Christine M, Pfau, Brian, Uyeki, Timothy M, Shendure, Jay, Hoag, Samara, Fay, Kairsten, Lee, Jover, Sibley, Thomas R, Rogers, Julia H, Starita, Lea M, Englund, Janet A, Chu, Helen Y

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Patterns and rates of viral evolution in HIV-1 subtype B infected females and males von Dapp, Michael J, Kober, Kord M, Chen, Lennie, Westfall, Dylan H, Wong, Kim, Zhao, Hong, Hall, Breana M, Deng, Wenjie, Sibley, Thomas, Ghorai, Suvankar, Kim, Katie, Chen, Natalie, McHugh, Sarah, Au, Lily, Cohen, Mardge, Anastos, Kathryn, Mullins, James I

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Ice storms, tree throw, and hillslope sediment transport in northern hardwood forests von Hellmer, Mark C., Rios, Bernardo A., Ouimet, William B., Sibley, Thomas R.

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Trends in Risk Factors and Symptoms Associated With SARS-CoV-2 and Rhinovirus Test Positivity in King County, Washington, June 2020 to July 2022 von Hansen, Chelsea, Perofsky, Amanda C, Burstein, Roy, Famulare, Michael, Boyle, Shanda, Prentice, Robin, Marshall, Cooper, McCormick, Benjamin J J, Reinhart, David, Capodanno, Ben, Truong, Melissa, Schwabe-Fry, Kristen, Kuchta, Kayla, Pfau, Brian, Acker, Zack, Lee, Jover, Sibley, Thomas R, McDermot, Evan, Rodriguez-Salas, Leslie, Stone, Jeremy, Gamboa, Luis, Han, Peter D, Duchin, Jeffery S, Waghmare, Alpana, Englund, Janet A, Shendure, Jay, Bedford, Trevor, Chu, Helen Y, Starita, Lea M, Viboud, Cécile

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Commitment to the Truth: A Pastoral Essay von Sibley, Thomas

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SARS-CoV-2 Epidemiology on a Public University Campus in Washington State von Weil, Ana A, Sohlberg, Sarah L, O’Hanlon, Jessica A, Casto, Amanda M, Emanuels, Anne W, Lo, Natalie K, Greismer, Emily P, Magedson, Ariana M, Wilcox, Naomi C, Kim, Ashley E, Back, Lewis, Frazar, Christian D, Pelle, Ben, Sibley, Thomas R, Ilcisin, Misja, Lee, Jover, Ryke, Erica L, Craft, J Chris, Schwabe-Fry, Kristen M, Fay, Kairsten A, Cho, Shari, Han, Peter D, Heidl, Sarah J, Pfau, Brian A, Truong, Melissa, Zhong, Weizhi, Srivatsan, Sanjay R, Harb, Katia F, Gottlieb, Geoffrey S, Hughes, James P, Nickerson, Deborah A, Lockwood, Christina M, Starita, Lea M, Bedford, Trevor, Shendure, Jay A, Chu, Helen Y

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Idempotents à la mod von Sibley, Thomas Q.

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