Conservation of the behavioral and transcriptional response to social experience among Drosophilids von Shultzaberger, R. K., Johnson, S. J., Wagner, J., Ha, K., Markow, T. A., Greenspan, R. J.

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The C-Terminal Domain of DNA Gyrase A Adopts a DNA-Bending β-Pinwheel Fold von Corbett, Kevin D., Shultzaberger, Ryan K., Berger, James M., Cozzarelli, Nicholas R.

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Using sequence logos and information analysis of Lrp DNA binding sites to investigate discrepancies between natural selection and SELEX von Shultzaberger, Ryan K., Schneider, Thomas D.

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Anatomy of Escherichia coli ribosome binding sites von Shultzaberger, R K, Bucheimer, R E, Rudd, K E, Schneider, T D

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Using sequence logos and information analysis of Lrp DNA binding sites to investigate discrepanciesbetween natural selection and SELEX von Shultzaberger, R K, Schneider, T D

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Correlation between binding rate constants and individual information of E. coli Fis binding sites von Shultzaberger, Ryan K, Roberts, Lindsey R, Lyakhov, Ilya G, Sidorov, Igor A, Stephen, Andrew G, Fisher, Robert J, Schneider, Thomas D

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The essential gene set of a photosynthetic organism von Rubin, Benjamin E., Wetmore, Kelly M., Price, Morgan N., Diamond, Spencer, Shultzaberger, Ryan K., Lowe, Laura C., Curtin, Genevieve, Arkin, Adam P., Deutschbauer, Adam, Golden, Susan S.

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Dynamic profiling of mRNA turnover reveals gene-specific and system-wide regulation of mRNA decay von Munchel, Sarah E, Shultzaberger, Ryan K, Takizawa, Naoki, Weis, Karsten

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Agnostic detection of genomic alterations by holistic DNA structural interrogation von Shultzaberger, Ryan K, Abrams, Rachel E, Sullivan, Challise J, Schmitt, Anthony D, Thompson, Thomas W J, Dresios, John

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Identification of Genomic Alterations Through Multilevel DNA Structural Analysis von Shultzaberger, Ryan K., Dresios, John

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Redox crisis underlies conditional light–dark lethality in cyanobacterial mutants that lack the circadian regulator, RpaA von Diamond, Spencer, Rubin, Benjamin E., Shultzaberger, Ryan K., Chen, You, Barber, Chase D., Golden, Susan S.

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Giving Time Purpose: The Synechococcus elongatus Clock in a Broader Network Context von Shultzaberger, Ryan K, Boyd, Joseph S, Diamond, Spencer, Greenspan, Ralph J, Golden, Susan S

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Probing the informational and regulatory plasticity of a transcription factor DNA-binding domain von Shultzaberger, Ryan K, Maerkl, Sebastian J, Kirsch, Jack F, Eisen, Michael B

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Single mutations in sasA enable a simpler ΔcikA gene network architecture with equivalent circadian properties von Shultzaberger, Ryan K, Boyd, Joseph S, Katsuki, Takeo, Golden, Susan S, Greenspan, Ralph J

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The fitness landscapes of cis-acting binding sites in different promoter and environmental contexts von Shultzaberger, Ryan K, Malashock, Daniel S, Kirsch, Jack F, Eisen, Michael B

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Discovery of Fur binding site clusters in Escherichia coli by information theory models von Chen, Zehua, Lewis, Karen A, Shultzaberger, Ryan K, Lyakhov, Ilya G, Zheng, Ming, Doan, Bernard, Storz, Gisela, Schneider, Thomas D

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High-throughput and quantitative approaches for measuring circadian rhythms in cyanobacteria using bioluminescence von Shultzaberger, Ryan K, Paddock, Mark L, Katsuki, Takeo, Greenspan, Ralph J, Golden, Susan S

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Determining physical constraints in transcriptional initiation complexes using DNA sequence analysis von Shultzaberger, Ryan K, Chiang, Derek Y, Moses, Alan M, Eisen, Michael B

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Flexible promoter architecture requirements for coactivator recruitment von Chiang, Derek Y, Nix, David A, Shultzaberger, Ryan K, Gasch, Audrey P, Eisen, Michael B

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The Fitness Landscapes of cis-Acting Binding Sites in Different Promoter and Environmental Contexts: e1001042 von Shultzaberger, Ryan K, Malashock, Daniel S, Kirsch, Jack F, Eisen, Michael B

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