KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis von Bu, Dechao, Luo, Haitao, Huo, Peipei, Wang, Zhihao, Zhang, Shan, He, Zihao, Wu, Yang, Zhao, Lianhe, Liu, Jingjia, Guo, Jincheng, Fang, Shuangsang, Cao, Wanchen, Yi, Lan, Zhao, Yi, Kong, Lei

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HERB: a high-throughput experiment- and reference-guided database of traditional Chinese medicine von Fang, ShuangSang, Dong, Lei, Liu, Liu, Guo, JinCheng, Zhao, LianHe, Zhang, JiaYuan, Bu, DeChao, Liu, XinKui, Huo, PeiPei, Cao, WanChen, Dong, QiongYe, Wu, JiaRui, Zeng, Xiaoxi, Wu, Yang, Zhao, Yi

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SymMap: an integrative database of traditional Chinese medicine enhanced by symptom mapping von Wu, Yang, Zhang, Feilong, Yang, Kuo, Fang, Shuangsang, Bu, Dechao, Li, Hui, Sun, Liang, Hu, Hairuo, Gao, Kuo, Wang, Wei, Zhou, Xuezhong, Zhao, Yi, Chen, Jianxin

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NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants von Zhao, Lianhe, Wang, Jiajia, Li, Yanyan, Song, Tingrui, Wu, Yang, Fang, Shuangsang, Bu, Dechao, Li, Hui, Sun, Liang, Pei, Dong, Zheng, Yu, Huang, Jianqin, Xu, Mingqing, Chen, Runsheng, Zhao, Yi, He, Shunmin

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NONCODE 2016: an informative and valuable data source of long non-coding RNAs von Zhao, Yi, Li, Hui, Fang, Shuangsang, Kang, Yue, Wu, Wei, Hao, Yajing, Li, Ziyang, Bu, Dechao, Sun, Ninghui, Zhang, Michael Q, Chen, Runsheng

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NONCODEV5: a comprehensive annotation database for long non-coding RNAs von Fang, ShuangSang, Zhang, LiLi, Guo, JinCheng, Niu, YiWei, Wu, Yang, Li, Hui, Zhao, LianHe, Li, XiYuan, Teng, XueYi, Sun, XianHui, Sun, Liang, Zhang, Michael Q, Chen, RunSheng, Zhao, Yi

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Computational Approaches and Challenges in Spatial Transcriptomics von Fang, Shuangsang, Chen, Bichao, Zhang, Yong, Sun, Haixi, Liu, Longqi, Liu, Shiping, Li, Yuxiang, Xu, Xun

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ST-GEARS: Advancing 3D downstream research through accurate spatial information recovery von Xia, Tianyi, Hu, Luni, Zuo, Lulu, Cao, Lei, Zhang, Yunjia, Xu, Mengyang, Lu, Qin, Zhang, Lei, Pan, Taotao, Zhang, Bohan, Ma, Bowen, Chen, Chuan, Guo, Junfu, Shi, Chang, Li, Mei, Liu, Chao, Li, Yuxiang, Zhang, Yong, Fang, Shuangsang

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A novel variable neighborhood search approach for cell clustering for spatial transcriptomics von Djordjevic, Aleksandra, Li, Junhua, Fang, Shuangsang, Cao, Lei, Ivanovic, Marija

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BatchEval Pipeline: batch effect evaluation workflow for multiple datasets joint analysis von Zhang, Chao, Kang, Qiang, Li, Mei, Xie, Hongqing, Fang, Shuangsang, Xu, Xun

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Evolutionary annotation of conserved long non-coding RNAs in major mammalian species von Bu, DeChao, Luo, HaiTao, Jiao, Fei, Fang, ShuangSang, Tan, ChengFu, Liu, ZhiYong, Zhao, Yi

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Comprehensive Characterization of the RNA Editomes in Cancer Development and Progression von Luo, Haitao, Fang, Shuangsang, Sun, Liang, Liu, Zhiyong, Zhao, Yi

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Generating single-cell gene expression profiles for high-resolution spatial transcriptomics based on cell boundary images von Zhang, Bohan, Li, Mei, Kang, Qiang, Deng, Zhonghan, Qin, Hua, Su, Kui, Feng, Xiuwen, Chen, Lichuan, Liu, Huanlin, Fang, Shuangsang, Zhang, Yong, Li, Yuxiang, Brix, Susanne, Xu, Xun

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SAW: an efficient and accurate data analysis workflow for Stereo-seq spatial transcriptomics von Gong, Chun, Li, Shengkang, Wang, Leying, Zhao, Fuxiang, Fang, Shuangsang, Yuan, Dong, Zhao, Zijian, He, Qiqi, Li, Mei, Liu, Weiqing, Li, Zhaoxun, Xie, Hongqing, Liao, Sha, Chen, Ao, Zhang, Yong, Li, Yuxiang, Xu, Xun

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Database Resources of the National Genomics Data Center in 2020 von Zhang, Zhang, Zhao, Wenming, Xiao, Jingfa, Bao, Yiming, He, Shunmin, Zhang, Guoqing, Li, Yixue, Zhao, Guoping, Chen, Runsheng, Gao, Yang, Zhang, Chao, Yuan, Liyun, Xu, Shuhua, Ning, Zhilin, Lu, Yan, Zeng, Jingyao, Yuan, Na, Zhu, Junwei, Pan, Mengyu, Zhang, Hao, Wang, Qi, Shi, Shuo, Jiang, Meiye, Lu, Mingming, Qian, Qiheng, Gao, Qianwen, Shang, Yunfei, Wang, Jinyue, Du, Zhenglin, Tian, Dongmei, Wang, Pei, Tang, Bixia, Li, Cuiping, Teng, Xufei, Liu, Xiaonan, Zou, Dong, Song, Shuhui, Xiong, Zhuang, Li, Mengwei, Yang, Fei, Ma, Yingke, Sang, Jian, Li, Zhaohua, Li, Rujiao, Wang, Zhonghuang, Zhu, Qianghui, Li, Xin, Zhang, Sisi, Kang, Hailong, Dong, Lili, Ying, Cui, Duan, Guangya, Li, Menghua, Zhi, Xiaoyang, Ling, Yunchao, Cao, Ruifang, Jiang, Zhao, Zhou, Haokui, Lv, Daqing, Liu, Wan, Klenk, Hans-Peter, Zhang, Yadong, Zhang, Zhewen, Chen, Tingting, Chen, Xu, Wang, Yanqing, Wu, Song, Gong, Zheng, Chen, Meili, Fang, Shuangsang, Zhang, Lili, Guo, Jincheng, Niu, Yiwei, Wu, Yang, Li, Hui, Zhao, Lianhe, Li, Xiyuan, Teng, Xueyi, Sun, Xianhui, Sun, Liang, Zhao, Yi, Wang, Jiajia, Zhang, Peng, Li, Yanyan, Zheng, Yu, Chen, Xiaomin, Xue, Hua, Teng, Yiheng, Kang, Quan, Hao, Yajing, Cao, Jiabao, Liu, Lin, Li, Zhao, Li, Qianpeng, Du, Qiang, Abbasi, Amir A, Shireen, Huma, Pervaiz, Nashaiman, Batool, Fatima, Raza, Rabail Z

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TcoFBase: a comprehensive database for decoding the regulatory transcription co-factors in human and mouse von Zhang, Yuexin, Song, Chao, Zhang, Yimeng, Wang, Yuezhu, Feng, Chenchen, Chen, Jiaxin, Wei, Ling, Pan, Qi, Shang, Desi, Zhu, Yanbing, Zhu, Jiang, Fang, Shuangsang, Zhao, Jun, Yang, Yongsan, Zhao, Xilong, Xu, Xiaozheng, Wang, Qiuyu, Guo, Jincheng, Li, Chunquan

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Identification and function annotation of long intervening noncoding RNAs von Luo, Haitao, Bu, Dechao, Sun, Liang, Fang, Shuangsang, Liu, Zhiyong, Zhao, Yi

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VarBen: Generating in Silico Reference Data Sets for Clinical Next-Generation Sequencing Bioinformatics Pipeline Evaluation von Li, Ziyang, Fang, Shuangsang, Zhang, Rui, Yu, Lijia, Zhang, Jiawei, Bu, Dechao, Sun, Liang, Zhao, Yi, Li, Jinming

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EAGS: efficient and adaptive Gaussian smoothing applied to high-resolved spatial transcriptomics von Lv, Tongxuan, Zhang, Ying, Li, Mei, Kang, Qiang, Fang, Shuangsang, Zhang, Yong, Brix, Susanne, Xu, Xun

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spatiAlign: an unsupervised contrastive learning model for data integration of spatially resolved transcriptomics von Zhang, Chao, Liu, Lin, Zhang, Ying, Li, Mei, Fang, Shuangsang, Kang, Qiang, Chen, Ao, Xu, Xun, Zhang, Yong, Li, Yuxiang

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