RNA sequence analysis reveals macroscopic somatic clonal expansion across normal tissues von Yizhak, Keren, Aguet, François, Kim, Jaegil, Hess, Julian M., Kübler, Kirsten, Grimsby, Jonna, Frazer, Ruslana, Zhang, Hailei, Haradhvala, Nicholas J., Rosebrock, Daniel, Livitz, Dimitri, Li, Xiao, Arich-Landkof, Eila, Shoresh, Noam, Stewart, Chip, Segrè, Ayellet V., Branton, Philip A., Polak, Paz, Ardlie, Kristin G., Getz, Gad

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Antibiotic tolerance facilitates the evolution of resistance von Levin-Reisman, Irit, Ronin, Irine, Gefen, Orit, Braniss, Ilan, Shoresh, Noam, Balaban, Nathalie Q.

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Optimization of lag time underlies antibiotic tolerance in evolved bacterial populations von Fridman, Ofer, Goldberg, Amir, Ronin, Irine, Shoresh, Noam, Balaban, Nathalie Q.

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Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types von Finucane, Hilary K., Reshef, Yakir A., Anttila, Verneri, Slowikowski, Kamil, Gusev, Alexander, Byrnes, Andrea, Gazal, Steven, Loh, Po-Ru, Lareau, Caleb, Shoresh, Noam, Genovese, Giulio, Saunders, Arpiar, Macosko, Evan, Pollack, Samuela, Perry, John R. B., Buenrostro, Jason D., Bernstein, Bradley E., Raychaudhuri, Soumya, McCarroll, Steven, Neale, Benjamin M., Price, Alkes L.

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An Experimental Framework for Quantifying Bacterial Tolerance von Brauner, Asher, Shoresh, Noam, Fridman, Ofer, Balaban, Nathalie Q.

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Polyploidy can drive rapid adaptation in yeast von Selmecki, Anna M., Maruvka, Yosef E., Richmond, Phillip A., Guillet, Marie, Shoresh, Noam, Sorenson, Amber L., De, Subhajyoti, Kishony, Roy, Michor, Franziska, Dowell, Robin, Pellman, David

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Mapping and analysis of chromatin state dynamics in nine human cell types von Ernst, Jason, Kheradpour, Pouya, Mikkelsen, Tarjei S., Shoresh, Noam, Ward, Lucas D., Epstein, Charles B., Zhang, Xiaolan, Wang, Li, Issner, Robbyn, Coyne, Michael, Ku, Manching, Durham, Timothy, Kellis, Manolis, Bernstein, Bradley E.

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Genetic and epigenetic fine mapping of causal autoimmune disease variants von Farh, Kyle Kai-How, Marson, Alexander, Zhu, Jiang, Kleinewietfeld, Markus, Housley, William J., Beik, Samantha, Shoresh, Noam, Whitton, Holly, Ryan, Russell J. H., Shishkin, Alexander A., Hatan, Meital, Carrasco-Alfonso, Marlene J., Mayer, Dita, Luckey, C. John, Patsopoulos, Nikolaos A., De Jager, Philip L., Kuchroo, Vijay K., Epstein, Charles B., Daly, Mark J., Hafler, David A., Bernstein, Bradley E.

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Accelerated evolution of resistance in multidrug environments von Hegreness, Matthew, Shoresh, Noam, Damian, Doris, Hartl, Daniel, Kishony, Roy

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Detecting sample swaps in diverse NGS data types using linkage disequilibrium von Javed, Nauman, Farjoun, Yossi, Fennell, Tim J., Epstein, Charles B., Bernstein, Bradley E., Shoresh, Noam

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Regulation of phenotypic variability by a threshold-based mechanism underlies bacterial persistence von Rotem, Eitan, Loinger, Adiel, Ronin, Irine, Levin-Reisman, Irit, Gabay, Chana, Shoresh, Noam, Biham, Ofer, Balaban, Nathalie Q., Losick, Richard M.

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Combinatorial Patterning of Chromatin Regulators Uncovered by Genome-wide Location Analysis in Human Cells von Ram, Oren, Goren, Alon, Amit, Ido, Shoresh, Noam, Yosef, Nir, Ernst, Jason, Kellis, Manolis, Gymrek, Melissa, Issner, Robbyn, Coyne, Michael, Durham, Timothy, Zhang, Xiaolan, Donaghey, Julie, Epstein, Charles B., Regev, Aviv, Bernstein, Bradley E.

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Multi-locus CRISPRi targeting with a single truncated guide RNA von Moore, Molly M., Wekhande, Siddarth, Issner, Robbyn, Collins, Alejandro, Cruz, Anna J., Liu, Yanjing V., Javed, Nauman, Casaní-Galdón, Salvador, Buenrostro, Jason D., Epstein, Charles B., Mattei, Eugenio, Doench, John G., Bernstein, Bradley E., Shoresh, Noam, Najm, Fadi J.

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Equivalence Principle for the Incorporation of Favorable Mutations in Asexual Populations von Hegreness, Matthew, Shoresh, Noam, Hartl, Daniel, Kishony, Roy

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Analytical Results for Individual and Group Selection of Any Intensity von Traulsen, Arne, Shoresh, Noam, Nowak, Martin A

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Analyzing histone ChIP-seq data with a bin-based probability of being signal von Hecht, Vivian, Dong, Kevin, Rajesh, Sreshtaa, Shpilker, Polina, Wekhande, Siddarth, Shoresh, Noam

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High-Throughput Single-Cell Labeling (Hi-SCL) for RNA-Seq Using Drop-Based Microfluidics von Rotem, Assaf, Ram, Oren, Shoresh, Noam, Sperling, Ralph A, Schnall-Levin, Michael, Zhang, Huidan, Basu, Anindita, Bernstein, Bradley E, Weitz, David A

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Hybridization-based capture of pathogen mRNA enables paired host-pathogen transcriptional analysis von Betin, Viktoria, Penaranda, Cristina, Bandyopadhyay, Nirmalya, Yang, Rui, Abitua, Angela, Bhattacharyya, Roby P., Fan, Amy, Avraham, Roi, Livny, Jonathan, Shoresh, Noam, Hung, Deborah T.

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Exposing the fitness contribution of duplicated genes von DeLuna, Alexander, Vetsigian, Kalin, Shoresh, Noam, Hegreness, Matthew, Colón-González, Maritrini, Chao, Sharon, Kishony, Roy

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Evolution exacerbates the paradox of the plankton von Shoresh, Noam, Hegreness, Matthew, Kishony, Roy

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