Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals von Vaga, Stefania, Lee, Sunjae, Ji, Boyang, Andreasson, Anna, Talley, Nicholas J., Agréus, Lars, Bidkhori, Gholamreza, Kovatcheva-Datchary, Petia, Park, Junseok, Lee, Doheon, Proctor, Gordon, Ehrlich, Stanislav Dusko, Nielsen, Jens, Engstrand, Lars, Shoaie, Saeed

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Systems Biology Approaches to Understand the Host-Microbiome Interactions in Neurodegenerative Diseases von Rosario, Dorines, Boren, Jan, Uhlen, Mathias, Proctor, Gordon, Aarsland, Dag, Mardinoglu, Adil, Shoaie, Saeed

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Combined metabolic activators improve metabolic functions in the animal models of neurodegenerative diseases von Turkez, Hasan, Altay, Ozlem, Yildirim, Serkan, Li, Xiangyu, Yang, Hong, Bayram, Cemil, Bolat, Ismail, Oner, Sena, Tozlu, Ozlem Ozdemir, Arslan, Mehmet Enes, Arif, Muhammad, Yulug, Burak, Hanoglu, Lutfu, Cankaya, Seyda, Lam, Simon, Velioglu, Halil Aziz, Coskun, Ebru, Idil, Ezgi, Nogaylar, Rahim, Ozsimsek, Ahmet, Hacimuftuoglu, Ahmet, Shoaie, Saeed, Zhang, Cheng, Nielsen, Jens, Borén, Jan, Uhlén, Mathias, Mardinoglu, Adil

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Prediction of drug candidates for clear cell renal cell carcinoma using a systems biology-based drug repositioning approach von Li, Xiangyu, Shong, Koeun, Kim, Woonghee, Yuan, Meng, Yang, Hong, Sato, Yusuke, Kume, Haruki, Ogawa, Seishi, Turkez, Hasan, Shoaie, Saeed, Boren, Jan, Nielsen, Jens, Uhlen, Mathias, Zhang, Cheng, Mardinoglu, Adil

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Abundance and diversity of resistomes differ between healthy human oral cavities and gut von Carr, Victoria R., Witherden, Elizabeth A., Lee, Sunjae, Shoaie, Saeed, Mullany, Peter, Proctor, Gordon B., Gomez-Cabrero, David, Moyes, David L.

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Synergies of systems biology and synthetic biology in human microbiome studies von Ezzamouri, B, Shoaie, S, Ledesma Amaro, R

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Simplified Intestinal Microbiota to Study Microbe-Diet-Host Interactions in a Mouse Model von Kovatcheva-Datchary, Petia, Shoaie, Saeed, Lee, Sunjae, Wahlström, Annika, Nookaew, Intawat, Hallen, Anna, Perkins, Rosie, Nielsen, Jens, Bäckhed, Fredrik

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A systems biology approach for studying neurodegenerative diseases von Lam, Simon, Bayraktar, Abdulahad, Zhang, Cheng, Turkez, Hasan, Nielsen, Jens, Boren, Jan, Shoaie, Saeed, Uhlen, Mathias, Mardinoglu, Adil

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Postmortem Cortical Transcriptomics of Lewy Body Dementia Reveal Mitochondrial Dysfunction and Lack of Neuroinflammation von Rajkumar, Anto P., Bidkhori, Gholamreza, Shoaie, Saeed, Clarke, Emily, Morrin, Hamilton, Hye, Abdul, Williams, Gareth, Ballard, Clive, Francis, Paul, Aarsland, Dag

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Combined metabolic activators therapy ameliorates liver fat in nonalcoholic fatty liver disease patients von Zeybel, Mujdat, Altay, Ozlem, Arif, Muhammad, Li, Xiangyu, Yang, Hong, Fredolini, Claudia, Akyildiz, Murat, Saglam, Burcin, Gonenli, Mehmet Gokhan, Ural, Dilek, Kim, Woonghee, Schwenk, Jochen M, Zhang, Cheng, Shoaie, Saeed, Nielsen, Jens, Uhlén, Mathias, Borén, Jan, Mardinoglu, Adil

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Understanding the Representative Gut Microbiota Dysbiosis in Metformin-Treated Type 2 Diabetes Patients Using Genome-Scale Metabolic Modeling von Rosario, Dorines, Benfeitas, Rui, Bidkhori, Gholamreza, Zhang, Cheng, Uhlen, Mathias, Shoaie, Saeed, Mardinoglu, Adil

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Combined Metabolic Activators Accelerates Recovery in Mild‐to‐Moderate COVID‐19 von Altay, Ozlem, Arif, Muhammad, Li, Xiangyu, Yang, Hong, Aydın, Mehtap, Alkurt, Gizem, Kim, Woonghee, Akyol, Dogukan, Zhang, Cheng, Dinler‐Doganay, Gizem, Turkez, Hasan, Shoaie, Saeed, Nielsen, Jens, Borén, Jan, Olmuscelik, Oktay, Doganay, Levent, Uhlén, Mathias, Mardinoglu, Adil

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Body composition after allogeneic haematopoietic cell transplantation/total body irradiation in children and young people: a restricted systematic review von Lorenc, Ava, Hamilton-Shield, Julian, Perry, Rachel, Stevens, Michael

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A widely used sampling device in colorectal cancer screening programmes allows for large-scale microbiome studies von Gudra, Dita, Shoaie, Saeed, Fridmanis, Davids, Klovins, Janis, Wefer, Hugo, Silamikelis, Ivars, Peculis, Raitis, Kalnina, Ineta, Elbere, Ilze, Radovica-Spalvina, Ilze, Hultcrantz, Rolf, Šķenders, Ģirts, Leja, Marcis, Engstrand, Lars

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Retraction notice to “Combined metabolic activators improve metabolic functions in the animal models of neurodegenerative diseases” [Life Sci. 314 (2023) 121325] von Turkez, Hasan, Altay, Ozlem, Yildirim, Serkan, Li, Xiangyu, Yang, Hong, Bayram, Cemil, Bolat, Ismail, Oner, Sena, Tozlu, Ozlem Ozdemir, Arslan, Mehmet Enes, Arif, Muhammad, Yulug, Burak, Hanoglu, Lutfu, Cankaya, Seyda, Lam, Simon, Velioglu, Halil Aziz, Coskun, Ebru, Idil, Ezgi, Nogaylar, Rahim, Ozsimsek, Ahmet, Hacimuftuoglu, Ahmet, Shoaie, Saeed, Zhang, Cheng, Nielsen, Jens, Borén, Jan, Uhlén, Mathias, Mardinoglu, Adil

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Multiomics Analysis Reveals the Impact of Microbiota on Host Metabolism in Hepatic Steatosis von Zeybel, Mujdat, Arif, Muhammad, Li, Xiangyu, Altay, Ozlem, Yang, Hong, Shi, Mengnan, Akyildiz, Murat, Saglam, Burcin, Gonenli, Mehmet Gokhan, Yigit, Buket, Ulukan, Burge, Ural, Dilek, Shoaie, Saeed, Turkez, Hasan, Nielsen, Jens, Zhang, Cheng, Uhlén, Mathias, Borén, Jan, Mardinoglu, Adil

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Ellagic Acid and Its Metabolites as Potent and Selective Allosteric Inhibitors of Liver Pyruvate Kinase von Battisti, Umberto Maria, Gao, Chunixa, Akladios, Fady, Kim, Woonghee, Yang, Hong, Bayram, Cemil, Bolat, Ismail, Kiliclioglu, Metin, Yuksel, Nursena, Tozlu, Ozlem Ozdemir, Zhang, Cheng, Sebhaoui, Jihad, Iqbal, Shazia, Shoaie, Saeed, Hacimuftuoglu, Ahmet, Yildirim, Serkan, Turkez, Hasan, Uhlen, Mathias, Boren, Jan, Mardinoglu, Adil, Grøtli, Morten

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The Human Mucosal Mycobiome and Fungal Community Interactions von Witherden, Elizabeth A, Shoaie, Saeed, Hall, Rebecca A, Moyes, David L

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Transient colonizing microbes promote gut dysbiosis and functional impairment von Lee, Sunjae, Meslier, Victoria, Bidkhori, Gholamreza, Garcia-Guevara, Fernando, Etienne-Mesmin, Lucie, Clasen, Frederick, Park, Junseok, Plaza Oñate, Florian, Cai, Haizhuang, Le Chatelier, Emmanuelle, Pons, Nicolas, Pereira, Marcela, Seifert, Maike, Boulund, Fredrik, Engstrand, Lars, Lee, Doheon, Proctor, Gordon, Mardinoglu, Adil, Blanquet-Diot, Stéphanie, Moyes, David, Almeida, Mathieu, Ehrlich, S. Dusko, Uhlen, Mathias, Shoaie, Saeed

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Comparative genomics analysis of keratin-degrading Chryseobacterium species reveals their keratinolytic potential for secondary metabolite production von Kang, D, Shoaie, S, Jacquiod, S, Sørensen, SJ, Ledesma Amaro, R

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