Development and implementation of an algorithm for detection of protein complexes in large interaction networks von Altaf-Ul-Amin, Md, Shinbo, Yoko, Mihara, Kenji, Kurokawa, Ken, Kanaya, Shigehiko

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Assessment of metabolome annotation quality: a method for evaluating the false discovery rate of elemental composition searches von Matsuda, Fumio, Shinbo, Yoko, Oikawa, Akira, Hirai, Masami Yokota, Fiehn, Oliver, Kanaya, Shigehiko, Saito, Kazuki

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Clarification of Pathway-Specific Inhibition by Fourier Transform Ion Cyclotron Resonance/Mass Spectrometry-Based Metabolic Phenotyping Studies von Oikawa, Akira, Nakamura, Yukiko, Ogura, Tomonori, Kimura, Atsuko, Suzuki, Hideyuki, Sakurai, Nozomu, Shinbo, Yoko, Shibata, Daisuke, Kanaya, Shigehiko, Ohta, Daisaku

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Metabolomics approach for determining growth-specific metabolites based on Fourier transform ion cyclotron resonance mass spectrometry von Takahashi, Hiroki, Kai, Kosuke, Shinbo, Yoko, Tanaka, Kenichi, Ohta, Daisaku, Oshima, Taku, Altaf-Ul-Amin, Md, Kurokawa, Ken, Ogasawara, Naotake, Kanaya, Shigehiko

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Differential metabolomics unraveling light/dark regulation of metabolic activities in Arabidopsis cell culture von Nakamura, Yukiko, Kimura, Atsuko, Saga, Hirohisa, Oikawa, Akira, Shinbo, Yoko, Kai, Kosuke, Sakurai, Nozomu, Suzuki, Hideyuki, Kitayama, Masahiko, Shibata, Daisuke, Kanaya, Shigehiko, Ohta, Daisaku

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Visualization of metabolite identifier information von Matsuda, Fumio, Redestig, Henning, Sawada, Yuji, Shinbo, Yoko, Hirai, Masami Yokota, Kanaya, Shigehiko, Saito, Kazuki

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An approach to peak detection in GC-MS chromatograms and application of KNApSAcK database in prediction of candidate metabolites von Oishi, Takashi, Tanaka, Ken-ichi, Hashimoto, Takuya, Shinbo, Yoko, Jumtee, Kanokwan, Bamba, Takeshi, Fukusaki, Eiichiro, Suzuki, Hideyuki, Shibata, Daisuke, Takahashi, Hiroki, Asahi, Hiroko, Kurokawa, Ken, Nakamura, Yukiko, Hirai, Aki, Nakamura, Kensuke, Altaf-Ul-Amin, Md, Kanaya, Shigehiko

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Linkage mapping of four chicken calpain genes von Okumura, F. (Kagoshima Univ. (Japan). Faculty of Agriculture), Shimogiri, T, Shinbo, Y, Yoshizawa, K, Kawabe, K, Mannen, H, Okamoto, S, Cheng, H.H, Maeda, Y

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[Special Issue: Fact Databases and Freewares] DPClus: A Density-periphery Based Graph Clustering Software Mainly Focused on Detection of Protein Complexes in Interaction Networks von Amin, Md. Altaf-Ul, Tsuji, Hisashi, Kurokawa, Ken, Asahi, Hiroko, Shinbo, Yoko, Kanaya, Shigehiko

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WRITING IMPLEMENT, AND WRITING IMPLEMENT BODY von SHINBO, Kaoru, SHINBO, Yoko

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Clarification of Pathway-Specific Inhibition by Fourier Transform Ion Cyclotron Resonance/Mass Spectrometry-Based Metabolic Phenotyping Studies1[W] von Oikawa, Akira, Nakamura, Yukiko, Ogura, Tomonori, Kimura, Atsuko

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Prediction of Protein Functions Based on K-Cores of Protein-Protein Interaction Networks and Amino Acid Sequences von Altaf-Ul-Amine, Md, Nishikata, Kensaku, Korna, Toshihiro, Miyasato, Teppei, Shinbo, Yoko, Arifuzzaman, Md, Wada, Chieko, Maeda, Maki, Oshima, Taku, Mori, Hirotada, Kanaya, Shigehiko

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Quinolizidines. XXX. A Ready Access to the Dibenzo(a,f)quinolizidine Ring System from 1,2,3,4-Tetrahydroquinoline von OHBA, Masashi, SHINBO, Yoko, TODA, Mitsuhiro, FUJII, Tozo

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Elucidating Conservation of Genes in Multiple Genomes Based on Graphs Configured by Bidirectional Best-Hit Relationships von Maeno, Hijiri, Altaf-Ul-Amin, Md, Shinbo, Yoko, Kurokawa, Ken, Ogasawara, Naotake, Kanaya, Shigehiko

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Elucidating Conservation of Genes in Multiple Genomes Based on Graphs Configured by Bidirectional Best-Hit Relationships von Maeno, Hijiri, Altaf-Ul-Amin, Md, Shinbo, Yoko, Kurokawa, Ken, Ogasawara, Naotake, Kanaya, Shigehiko

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Comparison of Protein Complexes Predicted from PPI Networks by DPClus and Newman Clustering Algorithms von Tuji, Hisashi, Altaf-Ul-Amin, Md, Arita, Masanori, Nishio, Hirokazu, Shinbo, Yoko, Kurokawa, Ken, Kanaya, Shigehiko

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Comparison of Protein Complexes Predicted from PPI Networks by DPClus and Newman Clustering Algorithms von Tuji, Hisashi, Altaf-Ul-Amin, Md, Arita, Masanori, Nishio, Hirokazu, Shinbo, Yoko, Kurokawa, Ken, Kanaya, Shigehiko

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DPClus von Altaf-Ul Amin, Md, Tsuji, Hisashi, Kurokawa, Ken, Asahi, Hiroko, Shinbo, Yoko, Kanaya, Shigehiko

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Species-metabolite Database (KNApSAcK) von Shinbo, Yoko, Sakaguchi, Shun-ichi, Nakamura, Yukiko, Altaf-Ul-Amin, Md, Kurokawa, Ken, Funatsu, Kimito, Kanaya, Shigehiko

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[Special Issue: Fact Databases and Freewares] Species-metabolite Database (KNApSAcK): Elucidating Diversity of Flavonoids von Shinbo, Yoko, Sakaguchi, Shun-ichi, Nakamura, Yukiko, Altaf-Ul-Amin, Md, Kurokawa, Ken, Funatsu, Kimito, Kanaya, Shigehiko

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