Revealing the amino acid composition of proteins within an expanded genetic code von Aerni, Hans R, Shifman, Mark A, Rogulina, Svetlana, O'Donoghue, Patrick, Rinehart, Jesse

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X!!Tandem, an Improved Method for Running X!Tandem in Parallel on Collections of Commodity Computers von Bjornson, Robert D, Carriero, Nicholas J, Colangelo, Christopher, Shifman, Mark, Cheung, Kei-Hoi, Miller, Perry L, Williams, Kenneth

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YPED： An Integrated Bioinformatics Suite and Database for Mass Spectrometry-based Proteomics Research von Colangelo, Christopher M., Shifman, Mark, Cheung, Kei-Hoi, Stone, Kathryn L., Carriero, Nicholas J., Gulcicek, Erol E., Lam, TuKiet T., Wu, Terence, Bjornson, Robert D., Bruce, Can, Nairn, Angus C., Rinehart, Jesse, Miller, Perry L., Williams, Kenneth R.

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Probabilistic Enrichment of Phosphopeptides by Their Mass Defect von Bruce, Can, Shifman, Mark A, Miller, Perry, Gulcicek, Erol E

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YPED:  A Web-Accessible Database System for Protein Expression Analysis von Shifman, Mark A, Li, Yuli, Colangelo, Christopher M, Stone, Kathryn L, Wu, Terence L, Cheung, Kei-Hoi, Miller, Perry L, Williams, Kenneth R

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Yale Protein Expression Database 2.0 von Shifman, Mark, Colangelo, Christopher

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Exploring the portability of informatics capabilities from a clinical application to a bioscience application von Shifman, Mark A, Srivastava, Ranjana, Brandt, Cynthia A, Li, Tong-Ruei, White, Kevin, Miller, Perry L

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Development of a highly automated and multiplexed targeted proteome pipeline and assay for 112 rat brain synaptic proteins von Colangelo, Christopher M., Ivosev, Gordana, Chung, Lisa, Abbott, Thomas, Shifman, Mark, Sakaue, Fumika, Cox, David, Kitchen, Robert R., Burton, Lyle, Tate, Stephen A., Gulcicek, Erol, Bonner, Ron, Rinehart, Jesse, Nairn, Angus C., Williams, Kenneth R.

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Exploring issues of quality of service in a Next Generation Internet testbed: a case study using PathMaster von Shifman, Mark A, Sayward, Frederick G, Mattie, Mark E, Miller, Perry L

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YPED: a proteomics database for protein expression analysis von Shifman, Mark A, Sun, Kexin, Colangelo, Christopher M, Cheung, Kei-Hoi, Miller, Perry, Williams, Kenneth

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A Clinical Decision Support System for Monitoring Post-Colonoscopy Patient Follow-Up and Scheduling von Wadia, Roxanne, Shifman, Mark, Levin, Forrest L, Marenco, Luis, Brandt, Cynthia A, Cheung, Kei-Hoi, Taddei, Tamar, Krauthammer, Michael

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The integration of similar clinical research data collection instruments von Cohen, Dorothy B, Frawley, Sandra J, Shifman, Mark A, Miller, Perry L, Brandt, Cynthia

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Parallel Computation for Medicine and Biology: Applications of Linda At Yale University von Sittig, Dean F., Shifman, Mark A., Nadkarni, Prakash, Miller, Perry L.

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SURGICAL INSTRUMENT THAT ENABLES ACCESS TO A REGION OF INTEREST von SHIFMAN, Mark Elliot, YOO, Sun Jay, YE, Jack, DEBRABANDER, Rene, BHETHANABOTLA, Rohith, ISHIDA, Wataru, TRAN, Linh, SIVAKUMAR, Ananyaa, IYER, Rajiv, TU, Kevin, ROSENTHAL GARBER, Daniel, ELIZEBATH, Reena, MOU, Jody, COHEN, Alan R, DENG, Callie

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PFGE MAPPER: a tool to aid in the analysis of pulse field gel electrophoresis maps von SHIFMAN, M. A

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Portability issues for a structured clinical vocabulary: mapping from Yale to the Columbia medical entities dictionary von Kannry, J L, Wright, L, Shifman, M, Silverstein, S, Miller, P L

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Computer-assisted restriction mapping: an integrated approach to handling experimental uncertainty von Wright, L.W, Lichter, J.B, Reinitz, J, Shifman, M.A, Kidd, K.K, Miller, P.L

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SURGICAL INSTRUMENT THAT ENABLES ACCESS TO A REGION OF INTEREST von SHIFMAN, Mark Elliot, YOO, Sun Jay, YE, Jack, DEBRABANDER, Rene, BHETHANABOTLA, Rohith, ISHIDA, Wataru, TRAN, Linh, SIVAKUMAR, Ananyaa, ROSENTHAL GARBER Daniel, IYER, Rajiv, TU, Kevin, ELIZEBATH, Reena, MOU, Jody, COHEN, Alan R, DENG, Callie

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FABHELP: A Rule-Based Consultation Program for FAB Classification of Acute Myeloid Leukemia and Myelodysplastic Syndromes von Shifman, Mark A.

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In vivo catabolism of α1-proteinase inhibitor-trypsin, antithrombin III-thrombin and α2-macroglobulin-methylamine von Fuchs, Herbert E., A. Shifman, Mark, Pizzo, Salvatore V.

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