New insights from uncultivated genomes of the global human gut microbiome von Nayfach, Stephen, Shi, Zhou Jason, Seshadri, Rekha, Pollard, Katherine S., Kyrpides, Nikos C.

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Maast: genotyping thousands of microbial strains efficiently von Shi, Zhou Jason, Nayfach, Stephen, Pollard, Katherine S

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Oral microbiota of periodontal health and disease and their changes after nonsurgical periodontal therapy von Chen, Casey, Hemme, Chris, Beleno, Joan, Shi, Zhou Jason, Ning, Daliang, Qin, Yujia, Tu, Qichao, Jorgensen, Michael, He, Zhili, Wu, Liyou, Zhou, Jizhong

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A unified catalog of 204,938 reference genomes from the human gut microbiome von Almeida, Alexandre, Nayfach, Stephen, Boland, Miguel, Strozzi, Francesco, Beracochea, Martin, Shi, Zhou Jason, Pollard, Katherine S., Sakharova, Ekaterina, Parks, Donovan H., Hugenholtz, Philip, Segata, Nicola, Kyrpides, Nikos C., Finn, Robert D.

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Microbial functional trait of rRNA operon copy numbers increases with organic levels in anaerobic digesters von Wu, Linwei, Yang, Yunfeng, Chen, Si, Jason Shi, Zhou, Zhao, Mengxin, Zhu, Zhenwei, Yang, Sihang, Qu, Yuanyuan, Ma, Qiao, He, Zhili, Zhou, Jizhong, He, Qiang

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Microsomal triglyceride transfer protein and its role in apoB-lipoprotein assembly von Hussain, M Mahmood, Shi, Jason, Dreizen, Paul

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Bacteriophage-prokaryote dynamics and interaction within anaerobic digestion processes across time and space von Zhang, Junyu, Gao, Qun, Zhang, Qiuting, Wang, Tengxu, Yue, Haowei, Wu, Linwei, Shi, Jason, Qin, Ziyan, Zhou, Jizhong, Zuo, Jiane, Yang, Yunfeng

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Two games on arithmetic functions: SALIQUANT and NONTOTIENT von Paul Ellis, Jason Shi, Thotsaporn Aek Thanatipanonda, Andrew Tu

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High Concentrations of the Antibiotic Spiramycin in Wastewater Lead to High Abundance of Ammonia-Oxidizing Archaea in Nitrifying Populations von Zhang, Yu, Tian, Zhe, Liu, Miaomiao, Shi, Zhou Jason, Hale, Lauren, Zhou, Jizhong, Yang, Min

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Soil Microbial Community Responses to a Decade of Warming as Revealed by Comparative Metagenomics von Luo, Chengwei, Rodriguez-R, Luis M, Johnston, Eric R, Wu, Liyou, Cheng, Lei, Xue, Kai, Tu, Qichao, Deng, Ye, He, Zhili, Shi, Jason Zhou, Yuan, Mengting Maggie, Sherry, Rebecca A, Li, Dejun, Luo, Yiqi, Schuur, Edward A G, Chain, Patrick, Tiedje, James M, Zhou, Jizhong, Konstantinidis, Konstantinos T

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Identifying species-specific k-mers for fast and accurate metagenotyping with Maast and GT-Pro von Shi, Zhou Jason, Nayfach, Stephen, Pollard, Katherine S.

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Scalable Microbial Strain Inference in Metagenomic Data Using StrainFacts von Smith, Byron J., Li, Xiangpeng, Shi, Zhou Jason, Abate, Adam, Pollard, Katherine S.

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Aridity threshold in controlling ecosystem nitrogen cycling in arid and semi-arid grasslands von Wang, Chao, Wang, Xiaobo, Liu, Dongwei, Wu, Honghui, Lü, Xiaotao, Fang, Yunting, Cheng, Weixin, Luo, Wentao, Jiang, Ping, Shi, Jason, Yin, Huaqun, Zhou, Jizhong, Han, Xingguo, Bai, Edith

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Simultaneous Targeting of Multiple oncomiRs with Phosphorothioate or PNA-Based Anti-miRs in Lymphoma Cell Lines von Dhuri, Karishma, Pradeep, Sai Pallavi, Shi, Jason, Anastasiadou, Eleni, Slack, Frank J., Gupta, Anisha, Zhong, Xiao-bo, Bahal, Raman

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Disentangling direct from indirect relationships in association networks von Xiao, Naijia, Zhou, Aifen, Kempher, Megan L, Zhou, Benjamin Y, Shi, Zhou Jason, Yuan, Mengting, Guo, Xue, Wu, Linwei, Ning, Daliang, Van Nostrand, Joy, Firestone, Mary K, Zhou, Jizhong

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Fast and accurate metagenotyping of the human gut microbiome with GT-Pro von Shi, Zhou Jason, Dimitrov, Boris, Zhao, Chunyu, Nayfach, Stephen, Pollard, Katherine S.

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Heterogeneous Multi-robot Mission Planning for Coordinated Tasks Execution von Dwiyasa, Felis, Lim, Meng-Hiot, Kang, Pyo, Foo, Ren-Xiang, Teo, Shi-Wei Jason

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Meme-Based Computational Optimization Framework von Dwiyasa, Felis, Lim, Meng-Hiot, Foo, Ren-Xiang, Teo, Shi-Wei Jason

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Warming effects on grassland soil microbial communities are amplified in cool months von Lei, Jiesi, Su, Yuanlong, Jian, Siyang, Guo, Xue, Yuan, Mengting, Bates, Colin T, Shi, Zhou Jason, Li, Jiabao, Su, Yifan, Ning, Daliang, Wu, Liyou, Zhou, Jizhong, Yang, Yunfeng

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Pitfalls of genotyping microbial communities with rapidly growing genome collections von Zhao, Chunyu, Shi, Zhou Jason, Pollard, Katherine S.

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