Ethanol-Induced Behavioral Sensitization Alters the Synaptic Transcriptome and Exon Utilization in DBA/2J Mice von O'Brien, Megan A, Weston, Rory M, Sheth, Nihar U, Bradley, Steven, Bigbee, John, Pandey, Ashutosh, Williams, Robert W, Wolstenholme, Jennifer T, Miles, Michael F

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The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies von Brooks, J Paul, Edwards, David J, Harwich, Jr, Michael D, Rivera, Maria C, Fettweis, Jennifer M, Serrano, Myrna G, Reris, Robert A, Sheth, Nihar U, Huang, Bernice, Girerd, Philippe, Strauss, 3rd, Jerome F, Jefferson, Kimberly K, Buck, Gregory A

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Differences in vaginal microbiome in African American women versus women of European ancestry von Fettweis, Jennifer M, Brooks, J Paul, Serrano, Myrna G, Sheth, Nihar U, Girerd, Philippe H, Edwards, David J, Strauss, Jerome F, The Vaginal Microbiome Consortium, Jefferson, Kimberly K, Buck, Gregory A

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MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing von Parikh, Hardik I, Koparde, Vishal N, Bradley, Steven P, Buck, Gregory A, Sheth, Nihar U

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An emerging mycoplasma associated with trichomoniasis, vaginal infection and disease von Fettweis, Jennifer M, Serrano, Myrna G, Huang, Bernice, Brooks, J Paul, Glascock, Abigail L, Sheth, Nihar U, Strauss, 3rd, Jerome F, Jefferson, Kimberly K, Buck, Gregory A

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Species-level classification of the vaginal microbiome von Fettweis, Jennifer M, Serrano, Myrna G, Sheth, Nihar U, Mayer, Carly M, Glascock, Abigail L, Brooks, J Paul, Jefferson, Kimberly K, Buck, Gregory A

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Effects of Combined Oral Contraceptives, Depot Medroxyprogesterone Acetate, and the Levonorgestrel-releasing Intrauterine System on the Vaginal Microbiome von Paul Brooks, J, Edwards, David J, Blithe, Diana L, Fettweis, Jennifer M, Serrano, Myrna G, Sheth, Nihar U, Strauss, Jerome F, Buck, Gregory A, Jefferson, Kimberly K

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Rare mutations and potentially damaging missense variants in genes encoding fibrillar collagens and proteins involved in their production are candidates for risk for preterm premat... von Modi, Bhavi P, Teves, Maria E, Pearson, Laurel N, Parikh, Hardik I, Chaemsaithong, Piya, Sheth, Nihar U, York, Timothy P, Romero, Roberto, Strauss, 3rd, Jerome F

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Association between statin use, the vaginal microbiome, and Gardnerella vaginalis vaginolysin-mediated cytotoxicity von Abdelmaksoud, Abdallah A, Girerd, Philippe H, Garcia, Erin M, Brooks, J Paul, Leftwich, Lauren M, Sheth, Nihar U, Bradley, Steven P, Serrano, Myrna G, Fettweis, Jennifer M, Huang, Bernice, Strauss, 3rd, Jerome F, Buck, Gregory A, Jefferson, Kimberly K

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Comparison of Lactobacillus crispatus isolates from Lactobacillus-dominated vaginal microbiomes with isolates from microbiomes containing bacterial vaginosis-associated bacteria von Abdelmaksoud, Abdallah A, Koparde, Vishal N, Sheth, Nihar U, Serrano, Myrna G, Glascock, Abigail L, Fettweis, Jennifer M, Strauss, Jerome F, Buck, Gregory A, Jefferson, Kimberly K

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Second-generation shRNA libraries covering the mouse and human genomes von Silva, Jose M, Li, Mamie Z, Chang, Ken, Ge, Wei, Golding, Michael C, Rickles, Richard J, Siolas, Despina, Hu, Guang, Paddison, Patrick J, Schlabach, Michael R, Sheth, Nihar, Bradshaw, Jeff, Burchard, Julia, Kulkarni, Amit, Cavet, Guy, Sachidanandam, Ravi, McCombie, W Richard, Cleary, Michele A, Elledge, Stephen J, Hannon, Gregory J

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Dynamical system modeling to simulate donor T cell response to whole exome sequencing-derived recipient peptides: Understanding randomness in alloreactivity incidence following ste... von Koparde, Vishal, Abdul Razzaq, Badar, Suntum, Tara, Sabo, Roy, Scalora, Allison, Serrano, Myrna, Jameson-Lee, Max, Hall, Charles, Kobulnicky, David, Sheth, Nihar, Feltz, Juliana, Contaifer, Jr, Daniel, Wijesinghe, Dayanjan, Reed, Jason, Roberts, Catherine, Qayyum, Rehan, Buck, Gregory, Neale, Michael, Toor, Amir

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Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities von Martin, John, Sykes, Sean, Young, Sarah, Kota, Karthik, Sanka, Ravi, Sheth, Nihar, Orvis, Joshua, Sodergren, Erica, Wang, Zhengyuan, Weinstock, George M, Mitreva, Makedonka

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Cloning of short hairpin RNAs for gene knockdown in mammalian cells von Paddison, Patrick J, Cleary, Michele, Silva, Jose Maria, Chang, Kenneth, Sheth, Nihar, Sachidanandam, Ravi, Hannon, Gregory J

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Whole exome sequencing to estimate alloreactivity potential between donors and recipients in stem cell transplantation von Sampson, Juliana K., Sheth, Nihar U., Koparde, Vishal N., Scalora, Allison F., Serrano, Myrna G., Lee, Vladimir, Roberts, Catherine H., Jameson‐Lee, Max, Ferreira‐Gonzalez, Andrea, Manjili, Masoud H., Buck, Gregory A., Neale, Michael C., Toor, Amir A.

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In silico Derivation of HLA-Specific Alloreactivity Potential from Whole Exome Sequencing of Stem-Cell Transplant Donors and Recipients: Understanding the Quantitative Immunobiolog... von Jameson-Lee, Max, Koparde, Vishal, Griffith, Phil, Scalora, Allison F, Sampson, Juliana K, Khalid, Haniya, Sheth, Nihar U, Batalo, Michael, Serrano, Myrna G, Roberts, Catherine H, Hess, Michael L, Buck, Gregory A, Neale, Michael C, Manjili, Masoud H, Toor, Amir Ahmed

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Production of complex nucleic acid libraries using highly parallel in situ oligonucleotide synthesis von Cleary, Michele A, Kilian, Kristopher, Wang, Yanqun, Bradshaw, Jeff, Cavet, Guy, Ge, Wei, Kulkarni, Amit, Paddison, Patrick J, Chang, Kenneth, Sheth, Nihar, Leproust, Eric, Coffey, Ernest M, Burchard, Julja, McCombie, W Richard, Linsley, Peter, Hannon, Gregory J

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Putative cis-regulatory elements associated with heat shock genes activated during excystation of Cryptosporidium parvum von Cohn, Benjamin, Manque, Patricio, Lara, Ana M, Serrano, Myrna, Sheth, Nihar, Buck, Gregory

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The vaginal microbiome and preterm birth von Fettweis, Jennifer M., Serrano, Myrna G., Brooks, J. Paul, Edwards, David J., Girerd, Philippe H., Parikh, Hardik I., Huang, Bernice, Arodz, Tom J., Edupuganti, Laahirie, Glascock, Abigail L., Xu, Jie, Jimenez, Nicole R., Vivadelli, Stephany C., Fong, Stephen S., Sheth, Nihar U., Jean, Sophonie, Lee, Vladimir, Bokhari, Yahya A., Lara, Ana M., Mistry, Shreni D., Duckworth, Robert A., Bradley, Steven P., Koparde, Vishal N., Orenda, X. Valentine, Milton, Sarah H., Rozycki, Sarah K., Matveyev, Andrey V., Wright, Michelle L., Huzurbazar, Snehalata V., Jackson, Eugenie M., Smirnova, Ekaterina, Korlach, Jonas, Tsai, Yu-Chih, Dickinson, Molly R., Brooks, Jamie L., Drake, Jennifer I., Chaffin, Donald O., Sexton, Amber L., Gravett, Michael G., Rubens, Craig E., Wijesooriya, N. Romesh, Hendricks-Muñoz, Karen D., Jefferson, Kimberly K., Strauss, Jerome F., Buck, Gregory A.

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Multi-omic Microbiome Profiles in the Female Reproductive Tract in Early Pregnancy von Jean, Sophonie, Huang, Bernice, Parikh, Hardik I., Edwards, David J., Brooks, J. Paul, Kumar, Naren Gajenthra, Sheth, Nihar U., Koparde, Vishal, Smirnova, Ekaterina, Huzurbazar, Snehalata, Girerd, Philippe H., Wijesinghe, Dayanjan S., Strauss, Jerome F., Serrano, Myrna G., Fettweis, Jennifer M., Jefferson, Kimberly K., Buck, Gregory A.

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