A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci von Mamidi, Sujan, Healey, Adam, Huang, Pu, Grimwood, Jane, Jenkins, Jerry, Barry, Kerrie, Sreedasyam, Avinash, Shu, Shengqiang, Lovell, John T., Feldman, Maximilian, Wu, Jinxia, Yu, Yunqing, Chen, Cindy, Johnson, Jenifer, Sakakibara, Hitoshi, Kiba, Takatoshi, Sakurai, Tetsuya, Tavares, Rachel, Nusinow, Dmitri A., Baxter, Ivan, Schmutz, Jeremy, Brutnell, Thomas P., Kellogg, Elizabeth A.

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The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization von McCormick, Ryan F., Truong, Sandra K., Sreedasyam, Avinash, Jenkins, Jerry, Shu, Shengqiang, Sims, David, Kennedy, Megan, Amirebrahimi, Mojgan, Weers, Brock D., McKinley, Brian, Mattison, Ashley, Morishige, Daryl T., Grimwood, Jane, Schmutz, Jeremy, Mullet, John E.

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The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity von Verde, Ignazio, Jenkins, Jerry, Dondini, Luca, Micali, Sabrina, Pagliarani, Giulia, Vendramin, Elisa, Paris, Roberta, Aramini, Valeria, Gazza, Laura, Rossini, Laura, Bassi, Daniele, Troggio, Michela, Shu, Shengqiang, Grimwood, Jane, Tartarini, Stefano, Dettori, Maria Teresa, Schmutz, Jeremy

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Phytozome: a comparative platform for green plant genomics von Goodstein, David M., Shu, Shengqiang, Howson, Russell, Neupane, Rochak, Hayes, Richard D., Fazo, Joni, Mitros, Therese, Dirks, William, Hellsten, Uffe, Putnam, Nicholas , Rokhsar, Daniel S.

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AmiGO: online access to ontology and annotation data von Carbon, Seth, Ireland, Amelia, Mungall, Christopher J., Shu, ShengQiang, Marshall, Brad, Lewis, Suzanna

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The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history von Filiault, Danièle L, Ballerini, Evangeline S, Mandáková, Terezie, Aköz, Gökçe, Derieg, Nathan J, Schmutz, Jeremy, Jenkins, Jerry, Grimwood, Jane, Shu, Shengqiang, Hayes, Richard D, Hellsten, Uffe, Barry, Kerrie, Yan, Juying, Mihaltcheva, Sirma, Karafiátová, Miroslava, Nizhynska, Viktoria, Kramer, Elena M, Lysak, Martin A, Hodges, Scott A, Nordborg, Magnus

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The genome of cowpea (Vigna unguiculata [L.] Walp.) von Lonardi, Stefano, Muñoz‐Amatriaín, María, Liang, Qihua, Shu, Shengqiang, Wanamaker, Steve I., Lo, Sassoum, Tanskanen, Jaakko, Schulman, Alan H., Zhu, Tingting, Luo, Ming‐Cheng, Alhakami, Hind, Ounit, Rachid, Hasan, Abid Md, Verdier, Jerome, Roberts, Philip A., Santos, Jansen R.P., Ndeve, Arsenio, Doležel, Jaroslav, Vrána, Jan, Hokin, Samuel A., Farmer, Andrew D., Cannon, Steven B., Close, Timothy J.

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Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure von Gordon, Sean P., Contreras-Moreira, Bruno, Woods, Daniel P., Des Marais, David L., Burgess, Diane, Shu, Shengqiang, Stritt, Christoph, Roulin, Anne C., Schackwitz, Wendy, Tyler, Ludmila, Martin, Joel, Lipzen, Anna, Dochy, Niklas, Phillips, Jeremy, Barry, Kerrie, Geuten, Koen, Budak, Hikmet, Juenger, Thomas E., Amasino, Richard, Caicedo, Ana L., Goodstein, David, Davidson, Patrick, Mur, Luis A. J., Figueroa, Melania, Freeling, Michael, Catalan, Pilar, Vogel, John P.

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A willow sex chromosome reveals convergent evolution of complex palindromic repeats von Zhou, Ran, Macaya-Sanz, David, Carlson, Craig H, Schmutz, Jeremy, Jenkins, Jerry W, Kudrna, David, Sharma, Aditi, Sandor, Laura, Shu, Shengqiang, Barry, Kerrie, Tuskan, Gerald A, Ma, Tao, Liu, Jianquan, Olson, Matthew, Smart, Lawrence B, DiFazio, Stephen P

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The Reference Genome of the Halophytic Plant Eutrema salsugineum von Yang, Ruolin, Jarvis, David E, Chen, Hao, Beilstein, Mark A, Grimwood, Jane, Jenkins, Jerry, Shu, Shengqiang, Prochnik, Simon, Xin, Mingming, Ma, Chuang, Schmutz, Jeremy, Wing, Rod A, Mitchell-Olds, Thomas, Schumaker, Karen S, Wang, Xiangfeng

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Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing von Hellsten, Uffe, Wright, Kevin M., Jenkins, Jerry, Shu, Shengqiang, Yuan, Yaowu, Wessler, Susan R., Schmutz, Jeremy, Willis, John H., Rokhsar, Daniel S.

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The Amphimedon queenslandica genome and the evolution of animal complexity von Srivastava, Mansi, Degnan, Bernard M, Rokhsar, Daniel S, Simakov, Oleg, Chapman, Jarrod, Fahey, Bryony, Gauthier, Marie E. A, Mitros, Therese, Richards, Gemma S, Conaco, Cecilia, Dacre, Michael, Hellsten, Uffe, Larroux, Claire, Putnam, Nicholas H, Stanke, Mario, Adamska, Maja, Darling, Aaron, Degnan, Sandie M, Oakley, Todd H, Plachetzki, David C, Zhai, Yufeng, Adamski, Marcin, Calcino, Andrew, Cummins, Scott F, Goodstein, David M, Harris, Christina, Jackson, Daniel J, Leys, Sally P, Shu, Shengqiang, Woodcroft, Ben J, Vervoort, Michel, Kosik, Kenneth S, Manning, Gerard

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A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa von Hofmeister, Brigitte T, Denkena, Johanna, Colomé-Tatché, Maria, Shahryary, Yadollah, Hazarika, Rashmi, Grimwood, Jane, Mamidi, Sujan, Jenkins, Jerry, Grabowski, Paul P, Sreedasyam, Avinash, Shu, Shengqiang, Barry, Kerrie, Lail, Kathleen, Adam, Catherine, Lipzen, Anna, Sorek, Rotem, Kudrna, Dave, Talag, Jayson, Wing, Rod, Hall, David W, Jacobsen, Daniel, Tuskan, Gerald A, Schmutz, Jeremy, Johannes, Frank, Schmitz, Robert J

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Genome biology of the paleotetraploid perennial biomass crop Miscanthus von Mitros, Therese, Session, Adam M., James, Brandon T., Wu, Guohong Albert, Belaffif, Mohammad B., Clark, Lindsay V., Shu, Shengqiang, Dong, Hongxu, Barling, Adam, Holmes, Jessica R., Mattick, Jessica E., Bredeson, Jessen V., Liu, Siyao, Farrar, Kerrie, Głowacka, Katarzyna, Jeżowski, Stanisław, Barry, Kerrie, Chae, Won Byoung, Juvik, John A., Gifford, Justin, Oladeinde, Adebosola, Yamada, Toshihiko, Grimwood, Jane, Putnam, Nicholas H., De Vega, Jose, Barth, Susanne, Klaas, Manfred, Hodkinson, Trevor, Li, Laigeng, Jin, Xiaoli, Peng, Junhua, Yu, Chang Yeon, Heo, Kweon, Yoo, Ji Hye, Ghimire, Bimal Kumar, Donnison, Iain S., Schmutz, Jeremy, Hudson, Matthew E., Sacks, Erik J., Moose, Stephen P., Swaminathan, Kankshita, Rokhsar, Daniel S.

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A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism von Cooper, Elizabeth A, Brenton, Zachary W, Flinn, Barry S, Jenkins, Jerry, Shu, Shengqiang, Flowers, Dave, Luo, Feng, Wang, Yunsheng, Xia, Penny, Barry, Kerrie, Daum, Chris, Lipzen, Anna, Yoshinaga, Yuko, Schmutz, Jeremy, Saski, Christopher, Vermerris, Wilfred, Kresovich, Stephen

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The genomic landscape of molecular responses to natural drought stress in Panicum hallii von Lovell, John T., Jenkins, Jerry, Lowry, David B., Mamidi, Sujan, Sreedasyam, Avinash, Weng, Xiaoyu, Barry, Kerrie, Bonnette, Jason, Campitelli, Brandon, Daum, Chris, Gordon, Sean P., Gould, Billie A., Khasanova, Albina, Lipzen, Anna, MacQueen, Alice, Palacio-Mejía, Juan Diego, Plott, Christopher, Shakirov, Eugene V., Shu, Shengqiang, Yoshinaga, Yuko, Zane, Matt, Kudrna, Dave, Talag, Jason D., Rokhsar, Daniel, Grimwood, Jane, Schmutz, Jeremy, Juenger, Thomas E.

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Genome sequence and evolution of Betula platyphylla von Chen, Su, Wang, Yucheng, Yu, Lili, Zheng, Tao, Wang, Sui, Yue, Zhen, Jiang, Jing, Kumari, Sapna, Zheng, Chunfang, Tang, Haibao, Li, Jun, Li, Yuqi, Chen, Jiongjiong, Zhang, Wenbo, Kuang, Hanhui, Robertson, Jon S., Zhao, Patrick X., Li, Huiyu, Shu, Shengqiang, Yordanov, Yordan S., Huang, Haijiao, Goodstein, David M., Gai, Ying, Qi, Qi, Min, JiuMeng, Xu, ChunYan, Wang, SongBo, Qu, Guan-Zheng, Paterson, Andrew H., Sankoff, David, Wei, Hairong, Liu, Guifeng, Yang, Chuanping

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Genome sequence of the model rice variety KitaakeX von Jain, Rashmi, Jenkins, Jerry, Shu, Shengqiang, Chern, Mawsheng, Martin, Joel A, Copetti, Dario, Duong, Phat Q, Pham, Nikki T, Kudrna, David A, Talag, Jayson, Schackwitz, Wendy S, Lipzen, Anna M, Dilworth, David, Bauer, Diane, Grimwood, Jane, Nelson, Catherine R, Xing, Feng, Xie, Weibo, Barry, Kerrie W, Wing, Rod A, Schmutz, Jeremy, Li, Guotian, Ronald, Pamela C

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Release 5.1 Annotation of Drosophila melanogaster Heterochromatin von Smith, Christopher D, Shu, ShengQiang, Mungall, Christopher J, Karpen, Gary H

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The Genome of Naegleria gruberi Illuminates Early Eukaryotic Versatility von Fritz-Laylin, Lillian K., Prochnik, Simon E., Ginger, Michael L., Dacks, Joel B., Carpenter, Meredith L., Field, Mark C., Kuo, Alan, Paredez, Alex, Chapman, Jarrod, Pham, Jonathan, Shu, Shengqiang, Neupane, Rochak, Cipriano, Michael, Mancuso, Joel, Tu, Hank, Salamov, Asaf, Lindquist, Erika, Shapiro, Harris, Lucas, Susan, Grigoriev, Igor V., Cande, W. Zacheus, Fulton, Chandler, Rokhsar, Daniel S., Dawson, Scott C.

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