rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data von Shen, Shihao, Park, Juw Won, Lu, Zhi-xiang, Lin, Lan, Henry, Michael D, Wu, Ying Nian, Zhou, Qing, Xing, Yi

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SURVIV for survival analysis of mRNA isoform variation von Shen, Shihao, Wang, Yuanyuan, Wang, Chengyang, Wu, Ying Nian, Xing, Yi

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phase1RMD: An R package for repeated measures dose-finding designs with novel toxicity and efficacy endpoints von Yin, Jun, Du, Yu, Qin, Rui, Shen, Shihao, Mandrekar, Sumithra

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Population and allelic variation of A-to-I RNA editing in human transcriptomes von Park, Eddie, Guo, Jiguang, Shen, Shihao, Demirdjian, Levon, Wu, Ying Nian, Lin, Lan, Xing, Yi

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Nonallele-specific Silencing of Mutant and Wild-type Huntingtin Demonstrates Therapeutic Efficacy in Huntington's Disease Mice von Boudreau, Ryan L, McBride, Jodi L, Martins, Inês, Shen, Shihao, Xing, Yi, Carter, Barrie J, Davidson, Beverly L

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Effects of Low-Intensity Pulsed Ultrasound on Integrin-FAK-PI3K/Akt Mechanochemical Transduction in Rabbit Osteoarthritis Chondrocytes von Cheng, Kai, Xia, Peng, Lin, Qiang, Shen, Shihao, Gao, Mingxia, Ren, Shasha, Li, Xueping

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Seismic Performance of Embedded Connections for Precast Hybrid Coupled Wall Systems: Experimental Study and Theoretical Analysis von Lu, Hailu, Su, Mingzhou, Wang, Yadong, Zhou, Yubo, Shen, Shihao

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Genome-Wide Determination of a Broad ESRP-Regulated Posttranscriptional Network by High-Throughput Sequencing von Dittmar, Kimberly A., Jiang, Peng, Park, Juw Won, Amirikian, Karine, Wan, Ji, Shen, Shihao, Xing, Yi, Carstens, Russell P.

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The epithelial splicing factors ESRP1 and ESRP2 positively and negatively regulate diverse types of alternative splicing events von Warzecha, Claude C., Shen, Shihao, Xing, Yi, Carstens, Russ P.

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Low-Intensity Pulsed Ultrasound Affects Chondrocyte Extracellular Matrix Production via an Integrin-Mediated p38 MAPK Signaling Pathway von Xia, Peng, Ren, Shasha, Lin, Qiang, Cheng, Kai, Shen, Shihao, Gao, Mingxia, Li, Xueping

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Widespread establishment and regulatory impact of Alu exons in human genes von Shen, Shihao, Lin, Lan, Cai, James J, Jiang, Peng, Kenkel, Elizabeth J, Stroik, Mallory R, Sato, Seiko, Davidson, Beverly L, Xing, Yi

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Paleomagnetic evidence for the Gothenburg geomagnetic excursion during the Pleistocene–Holocene transition recorded in the Paleo-Danyang Lake, eastern China von Chen, Zhongliang, Yuan, Feng, Zhang, Jinzhe, Shen, Shihao, Li, Xiaohui, Li, Xiangling, Huang, Meng, Jowitt, Simon M.

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Low‐Intensity Pulsed Ultrasound Treatment at an Early Osteoarthritis Stage Protects Rabbit Cartilage From Damage via the Integrin/Focal Adhesion Kinase/Mitogen‐Activated Protein Ki... von Xia, Peng, Shen, Shihao, Lin, Qiang, Cheng, Kai, Ren, Shasha, Gao, Mingxia, Li, Xueping

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Paleo-Environmental Variation and Its Control on the Organic Matter Accumulation in Black Shale of the Permian Gufeng Formation in the Lower Yangtze Area, South China von Shen, Weibing, Wang, Yangyang, Zheng, Ziyu, Shen, Shihao, Xie, Hongzhe, Qin, Haoyi, Bai, Maquzong

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A multi-proxy lacustrine record of last deglacial–early Holocene environmental variability in the lower Yangtze region from the Chaohu Lake Basin, eastern China von Guan, Houchun, Wu, Li, Zhang, Jinzhe, Shen, Shihao, Chu, Dongru, Li, Linying

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The RNA binding protein RBM38 (RNPC1) regulates splicing during late erythroid differentiation von Heinicke, Laurie A, Nabet, Behnam, Shen, Shihao, Jiang, Peng, van Zalen, Sebastiaan, Cieply, Benjamin, Russell, J Eric, Xing, Yi, Carstens, Russ P

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Enhanced degradation of tetracycline by Cu(II) complexation in the FeS/sulfite system von Cai, Ying, Shen, Shihao, Fan, Jinhong

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MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data von Shen, Shihao, Park, Juw Won, Huang, Jian, Dittmar, Kimberly A., Lu, Zhi-xiang, Zhou, Qing, Carstens, Russ P., Xing, Yi

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Evolution of alternative splicing in primate brain transcriptomes von Lin, Lan, Shen, Shihao, Jiang, Peng, Sato, Seiko, Davidson, Beverly L., Xing, Yi

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MADS: a new and improved method for analysis of differential alternative splicing by exon-tiling microarrays von Xing, Yi, Stoilov, Peter, Kapur, Karen, Han, Areum, Jiang, Hui, Shen, Shihao, Black, Douglas L, Wong, Wing Hung

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