Gene Co-occurrence Networks Reflect Bacteriophage Ecology and Evolution von Shapiro, Jason W, Putonti, Catherine

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Introducing Lu-1, a Novel Lactobacillus jensenii Phage Abundant in the Urogenital Tract von Miller-Ensminger, Taylor, Mormando, Rita, Maskeri, Laura, Shapiro, Jason W, Wolfe, Alan J, Putonti, Catherine

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Rephine.r: a pipeline for correcting gene calls and clusters to improve phage pangenomes and phylogenies von Shapiro, Jason W., Putonti, Catherine

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Batf3+ DCs and the 4-1BB/4-1BBL axis are required at the effector phase in the tumor microenvironment for PD-1/PD-L1 blockade efficacy von Ziblat, Andrea, Horton, Brendan L., Higgs, Emily F., Hatogai, Ken, Martinez, Anna, Shapiro, Jason W., Kim, Danny E.C., Zha, YuanYuan, Sweis, Randy F., Gajewski, Thomas F.

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Genomic Survey of E. coli From the Bladders of Women With and Without Lower Urinary Tract Symptoms von Garretto, Andrea, Miller-Ensminger, Taylor, Ene, Adriana, Merchant, Zubia, Shah, Aashaka, Gerodias, Athina, Biancofiori, Anthony, Canchola, Stacey, Canchola, Stephanie, Castillo, Emanuel, Chowdhury, Tasnim, Gandhi, Nikita, Hamilton, Sarah, Hatton, Kyla, Hyder, Syed, Krull, Koty, Lagios, Demetrios, Lam, Thinh, Mitchell, Kennedy, Mortensen, Christine, Murphy, Amber, Richburg, Joseph, Rokas, Meghan, Ryclik, Suzanne, Sulit, Pauline, Szwajnos, Thomas, Widuch, Manuel, Willis, Jessica, Woloszyn, Mary, Brassil, Bridget, Johnson, Genevieve, Mormando, Rita, Maskeri, Laura, Batrich, Mary, Stark, Nicole, Shapiro, Jason W., Montelongo Hernandez, Cesar, Banerjee, Swarnali, Wolfe, Alan J., Putonti, Catherine

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Genomes of Gardnerella Strains Reveal an Abundance of Prophages within the Bladder Microbiome von Malki, Kema, Shapiro, Jason W, Price, Travis K, Hilt, Evann E, Thomas-White, Krystal, Sircar, Trina, Rosenfeld, Amy B, Kuffel, Gina, Zilliox, Michael J, Wolfe, Alan J, Putonti, Catherine

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Comparative Genomic Study of Lactobacillus jensenii and the Newly Defined Lactobacillus mulieris Species Identifies Species-Specific Functionality von Putonti, Catherine, Shapiro, Jason W., Ene, Adriana, Tsibere, Oleksandra, Wolfe, Alan J.

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Evolution of parasitism and mutualism between filamentous phage M13 and Escherichia coli von Shapiro, Jason W, Williams, Elizabeth S C P, Turner, Paul E

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Evolution of mutualism from parasitism in experimental virus populations von Shapiro, Jason W., Turner, Paul E.

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Freshwater Metaviromics and Bacteriophages: A Current Assessment of the State of the Art in Relation to Bioinformatic Challenges von Bruder, Katherine, Malki, Kema, Cooper, Alexandria, Sible, Emily, Shapiro, Jason W, Watkins, Siobhan C, Putonti, Catherine

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Checkpoint Blockade-Induced Dermatitis and Colitis Are Dominated by Tissue-Resident Memory T Cells and Th1/Tc1 Cytokines von Reschke, Robin, Shapiro, Jason W, Yu, Jovian, Rouhani, Sherin J, Olson, Daniel J, Zha, Yuanyuan, Gajewski, Thomas F

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Adding biotic complexity alters the metabolic benefits of mutualism von Harcombe, William R., Betts, Alex, Shapiro, Jason W., Marx, Christopher J.

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UPΦ phages, a new group of filamentous phages found in several members of Enterobacteriales von Shapiro, Jason W, Putonti, Catherine

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The impact of transmission mode on the evolution of benefits provided by microbial symbionts von Shapiro, Jason W., Turner, Paul E.

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Introducing Lu-1, a NovelLactobacillus jenseniiPhage Abundant in the Urogenital Tract von Miller-Ensminger, Taylor, Mormando, Rita, Maskeri, Laura, Shapiro, Jason W., Wolfe, Alan J., Putonti, Catherine

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Abstract IA20: Checkpoint blockade–induced dermatitis and colitis are dominated by tissue-resident memory T cells and Th1/Tc1 cytokines von Reschke, Robin, Shapiro, Jason W, Yu, Jovian, Rouhani, Sherin J, Olson, Daniel J, Zha, Yuanyuan, Gajewski, Thomas F

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Comparative Genomic Study of Lactobacillus jensenii and the Newly Defined Lactobacillus mulieris Species Identifies Species-Specific Functionality von Catherine Putonti, Jason W. Shapiro, Adriana Ene, Oleksandra Tsibere, Alan J. Wolfe

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Genomic Survey ofE. coliFrom the Bladders of Women With and Without Lower Urinary Tract Symptoms von Garretto, Andrea, Miller-Ensminger, Taylor, Ene, Adriana, Merchant, Zubia, Shah, Aashaka, Gerodias, Athina, Biancofiori, Anthony, Canchola, Stacey, Canchola, Stephanie, Castillo, Emanuel, Chowdhury, Tasnim, Gandhi, Nikita, Hamilton, Sarah, Hatton, Kyla, Hyder, Syed, Krull, Koty, Lagios, Demetrios, Lam, Thinh, Mitchell, Kennedy, Mortensen, Christine, Murphy, Amber, Richburg, Joseph, Rokas, Meghan, Ryclik, Suzanne, Sulit, Pauline, Szwajnos, Thomas, Widuch, Manuel, Willis, Jessica, Woloszyn, Mary, Brassil, Bridget, Johnson, Genevieve, Mormando, Rita, Maskeri, Laura, Batrich, Mary, Stark, Nicole, Shapiro, Jason W., Montelongo Hernandez, Cesar, Banerjee, Swarnali, Wolfe, Alan J., Putonti, Catherine

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Freshwater Metaviromics and Bacteriophages: A Current Assessment of the State of the Art in Relation to Bioinformatic Challenges von Katherine Bruder, Kema Malki, Alexandria Cooper, Emily Sible, Jason W. Shapiro, Siobhan C. Watkins, Catherine Putonti

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code_summary.R von Ziblat, Andrea, Shapiro, Jason W.

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