Genome sequence of the human malaria parasite Plasmodium falciparum von Gardner, Malcolm J., Hall, Neil, Fung, Eula, White, Owen, Berriman, Matthew, Hyman, Richard W., Carlton, Jane M., Pain, Arnab, Nelson, Karen E., Bowman, Sharen, Paulsen, Ian T., James, Keith, Eisen, Jonathan A., Rutherford, Kim, Salzberg, Steven L., Craig, Alister, Kyes, Sue, Chan, Man-Suen, Nene, Vishvanath, Shallom, Shamira J., Suh, Bernard, Peterson, Jeremy, Angiuoli, Sam, Pertea, Mihaela, Allen, Jonathan, Selengut, Jeremy, Haft, Daniel, Mather, Michael W., Vaidya, Akhil B., Martin, David M. A., Fairlamb, Alan H., Fraunholz, Martin J., Roos, David S., Ralph, Stuart A., McFadden, Geoffrey I., Cummings, Leda M., Subramanian, G. Mani, Mungall, Chris, Venter, J. Craig, Carucci, Daniel J., Hoffman, Stephen L., Newbold, Chris, Davis, Ronald W., Fraser, Claire M., Barrell, Bart

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Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii von Carlton, Jane M., Angiuoli, Samuel V., Suh, Bernard B., Kooij, Taco W., Pertea, Mihaela, Silva, Joana C., Ermolaeva, Maria D., Allen, Jonathan E., Selengut, Jeremy D., Koo, Hean L., Peterson, Jeremy D., Pop, Mihai, Kosack, Daniel S., Shumway, Martin F., Bidwell, Shelby L., Shallom, Shamira J., van Aken, Susan E., Riedmuller, Steven B., Feldblyum, Tamara V., Cho, Jennifer K., Quackenbush, John, Sedegah, Martha, Shoaibi, Azadeh, Cummings, Leda M., Florens, Laurence, Yates, John R., Raine, J. Dale, Sinden, Robert E., Harris, Michael A., Cunningham, Deirdre A., Preiser, Peter R., Bergman, Lawrence W., Vaidya, Akhil B., van Lin, Leo H., Janse, Chris J., Waters, Andrew P., Smith, Hamilton O., White, Owen R., Salzberg, Steven L., Venter, J. Craig, Fraser, Claire M., Hoffman, Stephen L., Gardner, Malcolm J., Carucci, Daniel J.

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Genome Sequence of Theileria parva, a Bovine Pathogen That Transforms Lymphocytes von Gardner, Malcolm J., Bishop, Richard, Shah, Trushar, de Villiers, Etienne P., Carlton, Jane M., Hall, Neil, Ren, Qinghu, Paulsen, Ian T., Pain, Arnab, Berriman, Matthew, Robert J. M. Wilson, Sato, Shigeharu, Ralph, Stuart A., Mann, David J., Xiong, Zikai, Shallom, Shamira J., Weidman, Janice, Jiang, Lingxia, Lynn, Jeffery, Weaver, Bruce, Shoaibi, Azadeh, Domingo, Alexander R., Wasawo, Delia, Crabtree, Jonathan, Wortman, Jennifer R., Haas, Brian, Angiuoli, Samuel V., Creasy, Todd H., Lu, Charles, Suh, Bernard, Silva, Joana C., Utterback, Teresa R., Feldblyum, Tamara V., Pertea, Mihaela, Allen, Jonathan, Nierman, William C., Evans L. N. Taracha, Salzberg, Steven L., White, Owen R., Fitzhugh, Henry A., Morzaria, Subhash, Venter, J. Craig, Fraser, Claire M., Nene, Vishvanath

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D16 EPIDEMIOLOGY AND PATHOGENESIS OF NONTUBERCULOUS MYCOBACTERIA INFECTIONS: Pulmonary Nontuberculous Mycobacterial Patients Have Normal Intracellular Th1, Th2 And Treg Cytokines von Wu, U-I, Olivier, K N, Sampaio, E P, Zelazny, A M, Lionakis, M S, Shallom, S J, Holland, S M

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Sequence of Plasmodium falciparum chromosomes 2, 10, 11 and 14 von Gardner, Malcolm J., Shallom, Shamira J., Carlton, Jane M., Salzberg, Steven L., Nene, Vishvanath, Shoaibi, Azadeh, Ciecko, Anne, Lynn, Jeffery, Rizzo, Michael, Weaver, Bruce, Jarrahi, Behnam, Brenner, Michael, Parvizi, Babak, Tallon, Luke, Moazzez, Azita, Granger, David, Fujii, Claire, Hansen, Cheryl, Pederson, James, Feldblyum, Tamara, Peterson, Jeremy, Suh, Bernard, Angiuoli, Sam, Pertea, Mihaela, Allen, Jonathan, Selengut, Jeremy, White, Owen, Cummings, Leda M., Smith, Hamilton O., Adams, Mark D., Venter, J. Craig, Carucci, Daniel J., Hoffman, Stephen L., Fraser, Claire M.

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Plasmids and rickettsial evolution: insight from Rickettsia felis von Gillespie, Joseph J, Beier, Magda S, Rahman, M Sayeedur, Ammerman, Nicole C, Shallom, Joshua M, Purkayastha, Anjan, Sobral, Bruno S, Azad, Abdu F

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Detection of Mixed Populations of Clarithromycin-Susceptible and -Resistant Mycobacterium abscessus Strains von Shallom, Shamira J, Zelazny, Adrian M

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Rickettsia phylogenomics: unwinding the intricacies of obligate intracellular life von Gillespie, Joseph J, Williams, Kelly, Shukla, Maulik, Snyder, Eric E, Nordberg, Eric K, Ceraul, Shane M, Dharmanolla, Chitti, Rainey, Daphne, Soneja, Jeetendra, Shallom, Joshua M, Vishnubhat, Nataraj Dongre, Wattam, Rebecca, Purkayastha, Anjan, Czar, Michael, Crasta, Oswald, Setubal, Joao C, Azad, Abdu F, Sobral, Bruno S

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Phylogeny of Gammaproteobacteria von WILLIAMS, Kelly P, GILLESPIE, Joseph J, SOBRAL, Bruno W. S, NORDBERG, Eric K, SNYDER, Eric E, SHALLOM, Joshua M, DICKERMAN, Allan W

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New Rapid Scheme for Distinguishing the Subspecies of the Mycobacterium abscessus Group and Identifying Mycobacterium massiliense Isolates with Inducible Clarithromycin Resistance von Shallom, Shamira J, Gardina, Paul J, Myers, Timothy G, Sebastian, Yinong, Conville, Patricia, Calhoun, Leslie B, Tettelin, Hervé, Olivier, Kenneth N, Uzel, Gulbu, Sampaio, Elizabeth P, Holland, Steven M, Zelazny, Adrian M

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Clonal Diversification and Changes in Lipid Traits and Colony Morphology in Mycobacterium abscessus Clinical Isolates von Park, In Kwon, Hsu, Amy P, Tettelin, Hervé, Shallom, Shamira J, Drake, Steven K, Ding, Li, Wu, Un-In, Adamo, Nick, Prevots, D Rebecca, Olivier, Kenneth N, Holland, Steven M, Sampaio, Elizabeth P, Zelazny, Adrian M

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Analysis of Ten Brucella Genomes Reveals Evidence for Horizontal Gene Transfer Despite a Preferred Intracellular Lifestyle von WATTAM, Alice R, WILLIAMS, Kelly P, YOO, H, FICHT, T. A, TSOLIS, R. M, MUNK, C, TAPIA, R, HAN, C. S, DETTER, J. C, BRUCE, D, BRETTIN, T. S, SOBRAL, Bruno W, SNYDER, Eric E, BOYLE, Stephen M, SETUBAL, Joao C, ALMEIDA, Nalvo F, SHUKLA, Maulik, DICKERMAN, A. W, CRASTA, O. R, KENYON, R, LU, J, SHALLOM, J. M

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Disulfiram Is Effective against Drug-Resistant Mycobacterium abscessus in a Zebrafish Embryo Infection Model von Winters, Carlynn G, Basnet, Ram M, Faasuamalie, Paige E, Shallom, Shamira J, Zelazny, Adrian M, Gupta, Shashank, Olivier, Kenneth N

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Evolution of Mycobacterium abscessus in the human lung: Cumulative mutations and genomic rearrangement of porin genes in patient isolates von Shallom, Shamira J., Tettelin, Hervé, Chandrasekaran, Prabha, Park, In Kwon, Agrawal, Sonia, Arora, Kriti, Sadzewicz, Lisa, Milstone, Aaron M., Aitken, Moira L., Brown-Elliott, Barbara A., Wallace, Richard J., Sampaio, Elizabeth P., Niederweis, Michael, Olivier, Kenneth N., Holland, Steven M., Zelazny, Adrian M.

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Transcriptional Response of Respiratory Epithelium to Nontuberculous Mycobacteria von Matsuyama, Masashi, Martins, Andrew J, Shallom, Shamira, Kamenyeva, Olena, Kashyap, Anuj, Sampaio, Elizabeth P, Kabat, Juraj, Olivier, Kenneth N, Zelazny, Adrian M, Tsang, John S, Holland, Steven M

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New Real-Time PCR Assays for Detection of Inducible and Acquired Clarithromycin Resistance in the Mycobacterium abscessus Group von Shallom, Shamira J, Moura, Natalia S, Olivier, Kenneth N, Sampaio, Elizabeth P, Holland, Steven M, Zelazny, Adrian M

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High-level relatedness among Mycobacterium abscessus subsp. massiliense strains from widely separated outbreaks von Tettelin, Hervé, Davidson, Rebecca M, Agrawal, Sonia, Aitken, Moira L, Shallom, Shamira, Hasan, Nabeeh A, Strong, Michael, de Moura, Vinicius Calado Nogueira, De Groote, Mary Ann, Duarte, Rafael S, Hine, Erin, Parankush, Sushma, Su, Qi, Daugherty, Sean C, Fraser, Claire M, Brown-Elliott, Barbara A, Wallace, Jr, Richard J, Holland, Steven M, Sampaio, Elizabeth P, Olivier, Kenneth N, Jackson, Mary, Zelazny, Adrian M

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Admission Screening for Candida auris Among High-Risk Patient Populations von Spalding, Christine D., Adrian, Zelazny, Kenosky, Christina M., Shallom, Shamira J., Syedmoussavi, Seyedmojtaba, Segre, Julia A., Palmore, Tara

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Tissue specific diversification, virulence and immune response to Mycobacterium bovis BCG in a patient with an IFN-γ R1 deficiency von Korol, Cecilia B., Shallom, Shamira J., Arora, Kriti, Boshoff, Helena I., Freeman, Alexandra F., King, Alejandra, Agrawal, Sonia, Daugherty, Sean C., Jancel, Timothy, Kabat, Juraj, Ganesan, Sundar, Torrero, Marina N., Sampaio, Elizabeth P., Barry, Clifton, Holland, Steve M, Tettelin, Hervé, Rosenzweig, Sergio D, Zelazny, Adrian M.

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Host-Interactive Genes in Amerindian Helicobacter pylori Diverge from Their Old World Homologs and Mediate Inflammatory Responses von MANE, S. P, DOMINGUEZ-BELLO, M. G, SHALLOM, S, SHUKLA, M, VARON, C, MEGRAUD, F, MALDONADO-CONTRERAS, A. L, WILLIAMS, K. P, BASSAGANYA-RIERA, J, BLASER, M. J, SOBRAL, B. W, HONTECILLAS, R, SKONECZKA, J, MOHAPATRA, S. K, CRASTA, O. R, EVANS, C, MODISE, T

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