Web Resources for HIV Type 1 Genotypic-Resistance Test Interpretation von Liu, Tommy F., Shafer, Robert W.

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Genotypic Testing for Human Immunodeficiency Virus Type 1 Drug Resistance von SHAFER, Robert W

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Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function von Martin, Darren P., Lytras, Spyros, Lucaci, Alexander G., Maier, Wolfgang, Grüning, Björn, Shank, Stephen D., Weaver, Steven, MacLean, Oscar A., Orton, Richard J., Lemey, Philippe, Boni, Maciej F., Tegally, Houriiyah, Harkins, Gordon W., Scheepers, Cathrine, Bhiman, Jinal N., Everatt, Josie, Amoako, Daniel G., San, James Emmanuel, Giandhari, Jennifer, Sigal, Alex, Williamson, Carolyn, Hsiao, Nei-yuan, von Gottberg, Anne, De Klerk, Arne, Shafer, Robert W., Robertson, David L., Wilkinson, Robert J., Sewell, B. Trevor, Lessells, Richard, Nekrutenko, Anton, Greaney, Allison J., Starr, Tyler N., Bloom, Jesse D., Murrell, Ben, Wilkinson, Eduan, Gupta, Ravindra K., de Oliveira, Tulio, Kosakovsky Pond, Sergei L.

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Human immunodeficiency virus reverse transcriptase and protease sequence database von Rhee, Soo-Yon, Gonzales, Matthew J., Kantor, Rami, Betts, Bradley J., Ravela, Jaideep, Shafer, Robert W.

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Ultra-Deep Pyrosequencing of Hepatitis B Virus Quasispecies from Nucleoside and Nucleotide Reverse-Transcriptase Inhibitor (NRTI)–Treated Patients and NRTI-Naive Patients von Margeridon-Thermet, Severine, Shulman, Nancy S., Ahmed, Aijaz, Shahriar, Rajin, Liu, Tommy, Wang, Chunlin, Holmes, Susan P., Babrzadeh, Farbod, Gharizadeh, Baback, Hanczaruk, Bozena, Simen, Birgitte B., Egholm, Michael, Shafer, Robert W.

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Impact of drug resistance-associated amino acid changes in HIV-1 subtype C on susceptibility to newer nonnucleoside reverse transcriptase inhibitors von Basson, Adriaan E, Rhee, Soo-Yon, Parry, Chris M, El-Khatib, Ziad, Charalambous, Salome, De Oliveira, Tulio, Pillay, Deenan, Hoffmann, Christopher, Katzenstein, David, Shafer, Robert W, Morris, Lynn

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Prediction of response to antiretroviral therapy by human experts and by the EuResist data‐driven expert system (the EVE study) von Zazzi, M, Kaiser, R, Sönnerborg, A, Struck, D, Altmann, A, Prosperi, M, Rosen‐Zvi, M, Petroczi, A, Peres, Y, Schülter, E, Boucher, CA, Brun‐Vezinet, F, Harrigan, PR, Morris, L, Obermeier, M, Perno, C‐F, Phanuphak, P, Pillay, D, Shafer, RW, Vandamme, A‐M, van Laethem, K, Wensing, AMJ, Lengauer, T, Incardona, F

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Pharmacogenetics of Long-Term Responses to Antiretroviral Regimens Containing Efavirenz and/or Nelfinavir: An Adult AIDS Clinical Trials Group Study von Haas, David W., Smeaton, Laura M., Shafer, Robert W., Robbins, Gregory K., Morse, Gene D., Labbé, Line, Wilkinson, Grant R., Clifford, David B., D’Aquila, Richard T., De Gruttola, Victor, Pollard, Richard B., Merigan, Thomas C., Hirsch, Martin S., George, Alfred L., Donahue, John P., Kim, Richard B.

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Selection analysis identifies clusters of unusual mutational changes in Omicron lineage BA.1 that likely impact Spike function von Martin, DP, Spyros, L, Lucaci, AG, Maier, W, Gruning, B, Shank, SD, Weaver, S, MacLean, OA, Orton, RJ, Lemey, P, Boni, MF, Tegally, H, Harkins, GW, Scheepers, C, Bhiman, JN, Everatt, J, Amoako, DG, San, JE, Giandhari, J, Sigal, A, Williamson, C, Hsiao, N-Y, Von Gottberg, A, De Klerk, A, Shafer, RW, Robertson, DL, Wilkinson, RJ, Sewell, TS, Lessells, R, Nekrutenko, A, Greaney, AJ, Starr, TN, Bloom, JD, Murrell, B, Wilkinson, E, Gupta, RK, De Oliveira, T, Kosakovsky Pond, SL

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Impact of HIV-1 subtype and antiretroviral therapy on protease and reverse transcriptase genotype: results of a global collaboration von Kantor, Rami, Katzenstein, David A, Efron, Brad, Carvalho, Ana Patricia, Wynhoven, Brian, Cane, Patricia, Clarke, John, Sirivichayakul, Sunee, Soares, Marcelo A, Snoeck, Joke, Pillay, Candice, Rudich, Hagit, Rodrigues, Rosangela, Holguin, Africa, Ariyoshi, Koya, Bouzas, Maria Belen, Cahn, Pedro, Sugiura, Wataru, Soriano, Vincent, Brigido, Luis F, Grossman, Zehava, Morris, Lynn, Vandamme, Anne-Mieke, Tanuri, Amilcar, Phanuphak, Praphan, Weber, Jonathan N, Pillay, Deenan, Harrigan, P Richard, Camacho, Ricardo, Schapiro, Jonathan M, Shafer, Robert W

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Comparison of Sequential Three-Drug Regimens as Initial Therapy for HIV-1 Infection von Robbins, Gregory K, De Gruttola, Victor, Shafer, Robert W, Smeaton, Laura M, Snyder, Sally W, Pettinelli, Carla, Dubé, Michael P, Fischl, Margaret A, Pollard, Richard B, Delapenha, Robert, Gedeon, Linda, van der Horst, Charles, Murphy, Robert L, Becker, Mark I, D'Aquila, Richard T, Vella, Stefano, Merigan, Thomas C, Hirsch, Martin S

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Glucose metabolism, lipid, and body fat changes in antiretroviral-naive subjects randomized to nelfinavir or efavirenz plus dual nucleosides von DUBE, Michael P, PARKE, Robert A, SNYDER, Sally W, MULLIGAN, Kathleen, TEBAS, Pablo, GRINSPOON, Steven K, ZACKIN, Robert A, ROBBINS, Gregory K, ROUBENOFF, Ronenn, SHAFER, Robert W, WININGER, David A, MEYER, William A

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Mutation Patterns and Structural Correlates in Human Immunodeficiency Virus Type 1 Protease following Different Protease Inhibitor Treatments von Wu, Thomas D, Schiffer, Celia A, Gonzales, Matthew J, Taylor, Jonathan, Kantor, Rami, Chou, Sunwen, Israelski, Dennis, Zolopa, Andrew R, Fessel, W Jeffrey, Shafer, Robert W

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Spectrum of Atazanavir-Selected Protease Inhibitor-Resistance Mutations von Rhee, Soo-Yon, Boehm, Michael, Tarasova, Olga, Di Teodoro, Giulia, Abecasis, Ana B, Sönnerborg, Anders, Bailey, Alexander J, Kireev, Dmitry, Zazzi, Maurizio, The EuResist Network Study Group, Shafer, Robert W

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Public database for HIV drug resistance in southern Africa von de Oliveira, Tulio, Shafer, Robert W, Seebregts, Christopher

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Mitochondrial haplogroups and peripheral neuropathy during antiretroviral therapy : an adult AIDS clinical trials group study von HULGAN, Todd, HAAS, David W, HAINES, Jonathan L, RITCHIE, Marylyn D, ROBBINS, Gregory K, SHAFER, Robert W, CLIFFORD, David B, KALLIANPUR, Asha R, SUMMAR, Marshall, CANTER, Jeffrey A

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Comparison of Four-Drug Regimens and Pairs of Sequential Three-Drug Regimens as Initial Therapy for HIV-1 Infection von Shafer, Robert W, Smeaton, Laura M, Robbins, Gregory K, De Gruttola, Victor, Snyder, Sally W, D'Aquila, Richard T, Johnson, Victoria A, Morse, Gene D, Nokta, Mostafa A, Martinez, Ana I, Gripshover, Barbara M, Kaul, Pamposh, Haubrich, Richard, Swingle, Mary, McCarty, S. Debra, Vella, Stefano, Hirsch, Martin S, Merigan, Thomas C

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Evolution of resistance to drugs in HIV-1-infected patients failing antiretroviral therapy von KANTOR, Rami, SHAFER, Robert W, FOLLANSBEE, Stephen, TAYLOR, Jonathan, SHILANE, David, HURLEY, Leo, NGUYEN, Dong-Phuong, KATZENSTEIN, David, FESSEL, W. Jeffrey

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HIV-1 Protease and Reverse-Transcriptase Mutations: Correlations with Antiretroviral Therapy in Subtype B Isolates and Implications for Drug-Resistance Surveillance von Rhee, Soo-Yon, Fessel, W. Jeffrey, Zolopa, Andrew R., Hurley, Leo, Liu, Tommy, Taylor, Jonathan, Nguyen, Dong Phuong, Slome, Sally, Klein, Daniel, Horberg, Michael, Flamm, Jason, Follansbee, Stephen, Schapiro, Jonathan M., Shafer, Robert W.

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Predicting the Response to Combination Antiretroviral Therapy: Retrospective Validation of geno2pheno-THEO on a Large Clinical Database von Altmann, André, Däumer, Martin, Beerenwinkel, Niko, Peres, Yardena, Schülter, Eugen, Büch, Joachim, Rhee, Soo-Yon, Sönnerborg, Anders, Fessel, W. Jeffrey, Shafer, Robert W., Zazzi, Maurizio, Kaiser, Rolf, Lengauer, Thomas

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