Multiple reassortment events in the evolutionary history of H1N1 influenza A virus since 1918 von Nelson, Martha I, Viboud, Cécile, Simonsen, Lone, Bennett, Ryan T, Griesemer, Sara B, St George, Kirsten, Taylor, Jill, Spiro, David J, Sengamalay, Naomi A, Ghedin, Elodie, Taubenberger, Jeffery K, Holmes, Edward C

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Stochastic processes are key determinants of short-term evolution in influenza a virus von Nelson, Martha I, Simonsen, Lone, Viboud, Cecile, Miller, Mark A, Taylor, Jill, George, Kirsten St, Griesemer, Sara B, Ghedin, Elodie, Ghedi, Elodie, Sengamalay, Naomi A, Spiro, David J, Volkov, Igor, Grenfell, Bryan T, Lipman, David J, Taubenberger, Jeffery K, Holmes, Edward C

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Genome analysis linking recent European and African influenza (H5N1) viruses von Salzberg, Steven L, Kingsford, Carl, Cattoli, Giovanni, Spiro, David J, Janies, Daniel A, Aly, Mona Mehrez, Brown, Ian H, Couacy-Hymann, Emmanuel, De Mia, Gian Mario, Dung, Do Huu, Guercio, Annalisa, Joannis, Tony, Maken Ali, Ali Safar, Osmani, Azizullah, Padalino, Iolanda, Saad, Magdi D, Savić, Vladimir, Sengamalay, Naomi A, Yingst, Samuel, Zaborsky, Jennifer, Zorman-Rojs, Olga, Ghedin, Elodie, Capua, Ilaria

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Draft Genome Sequences of the Diarrheagenic Escherichia coli Collection von Hazen, Tracy H, Sahl, Jason W, Redman, Julia C, Morris, Carolyn R, Daugherty, Sean C, Chibucos, Marcus C, Sengamalay, Naomi A, Fraser-Liggett, Claire M, Steinsland, Hans, Whittam, Thomas S, Whittam, Beth, Manning, Shannon D, Rasko, David A

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Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution von Spiro, David J, Bao, Yiming, Zaborsky, Jennifer, Subbu, Vik, Salzberg, Steven L, Ghedin, Elodie, Taylor, Jill, Koo, Hean, Fraser, Claire M, Dernovoy, Dmitry, Lipman, David J, Bolotov, Pavel, Tatusova, Tatiana, Feldblyum, Tamara, Shumway, Martin, St George, Kirsten, Sitz, Jeff, Taubenberger, Jeffery K, Sengamalay, Naomi A

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Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum von Veluchamy, Alaguraj, Lin, Xin, Maumus, Florian, Rivarola, Maximo, Bhavsar, Jaysheel, Creasy, Todd, O’Brien, Kimberly, Sengamalay, Naomi A., Tallon, Luke J., Smith, Andrew D., Rayko, Edda, Ahmed, Ikhlak, Crom, Stéphane Le, Farrant, Gregory K., Sgro, Jean-Yves, Olson, Sue A., Bondurant, Sandra Splinter, Allen, Andrew E., Rabinowicz, Pablo D., Sussman, Michael R., Bowler, Chris, Tirichine, Leïla

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Correction: Stochastic Processes Are Key Determinants of Short-Term Evolution in Influenza A Virus von Nelson, Martha I., Simonsen, Lone, Viboud, Cecile, Miller, Mark A., Taylor, Jill, St. George, Kirsten, Griesemer, Sara B., Ghedin, Elodie, Sengamalay, Naomi A., Spiro, David J., Volkov, Igor, Grenfell, Brian T., Lipman, David J., Taubenberger, Jeffrey K., Holmes, Edward C.

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Corrigendum: Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum von Veluchamy, Alaguraj, Lin, Xin, Maumus, Florian, Rivarola, Maximo, Bhavsar, Jaysheel, Creasy, Todd, O'brien, Kimberly, Sengamalay, Naomi A, Tallon, Luke J, Smith, Andrew D, Rayko, Edda, Ahmed, Ikhlak, Crom, Stéphane Le, Farrant, Gregory K, Sgro, Jean-yves, Olson, Sue A, Bondurant, Sandra Splinter, Allen, Andrew E, Rabinowicz, Pablo D, Sussman, Michael R, Bowler, Chris, Tirichine, Leïla

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Draft Genome Sequence of Mortierella alpina Isolate CDC-B6842 von Etienne, Kizee A, Chibucos, Marcus C, Su, Qi, Orvis, Joshua, Daugherty, Sean, Ott, Sandra, Sengamalay, Naomi A, Fraser, Claire M, Lockhart, Shawn R, Bruno, Vincent M

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Correction: Corrigendum: Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum von Veluchamy, Alaguraj, Lin, Xin, Maumus, Florian, Rivarola, Maximo, Bhavsar, Jaysheel, Creasy, Todd, O’Brien, Kimberly, Sengamalay, Naomi A., Tallon, Luke J., Smith, Andrew D., Rayko, Edda, Ahmed, Ikhlak, Crom, Stéphane Le, Farrant, Gregory K., Sgro, Jean-Yves, Olson, Sue A., Bondurant, Sandra Splinter, Allen, Andrew E., Rabinowicz, Pablo D., Sussman, Michael R., Bowler, Chris, Tirichine, Leïla

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Multiple Reassortment Events in the Evolutionary History of H1N1 Influenza A Virus Since 1918: e1000012 von Nelson, Martha I, Viboud, Cécile, Simonsen, Lone, Bennett, Ryan T, Griesemer, Sara B, George, Kirsten St, Taylor, Jill, Spiro, David J, Sengamalay, Naomi A, Ghedin, Elodie, Taubenberger, Jeffery K, Holmes, Edward C

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Correction: stochastic processes are key determinants of short-term evolution in influenza a virus von Nelson, Martha I, Simonsen, Lone, Viboud, Cecile, Miller, Mark A, Taylor, Jill, St. George, Kirsten, Griesemer, Sara B, Ghedin, Elodie, Sengamalay, Naomi A, Spiro, David J, Volkov, Igor, Grenfell, Brian T, Lipman, David J, Taubenberger, Jeffrey K, Holmes, Edward C

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A) Phylogenetic tree relating the influenza A (H5N1) hemagglutinin (HA) segments of 589 avian, feline, and human viruses von Salzberg, Steven L., Kingsford, Carl, Cattoli, Giovanni, Spiro, David J., Janies, Daniel A., Aly, Mona Mehrez, Brown, Ian H., Couacy-Hymann, Emmanuel, Mia, Gian Mario De, Dung, Do Huu, Guercio, Annalisa, Joannis, Tony, Ali, Ali Safar Maken, Azizullah Osmani, Padalino, Iolanda, Magdi D. Saad, Savić, Vladimir, Sengamalay, Naomi A., Yingst, Samuel, Zaborsky, Jennifer, Zorman-Rojs, Olga, Ghedin, Elodie, Capua, Ilaria

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Phylogenetic tree of hemagglutinin (HA) segments from 36 avian influenza samples von Salzberg, Steven L., Kingsford, Carl, Cattoli, Giovanni, Spiro, David J., Janies, Daniel A., Aly, Mona Mehrez, Brown, Ian H., Couacy-Hymann, Emmanuel, Mia, Gian Mario De, Dung, Do Huu, Guercio, Annalisa, Joannis, Tony, Ali, Ali Safar Maken, Azizullah Osmani, Padalino, Iolanda, Magdi D. Saad, Savić, Vladimir, Sengamalay, Naomi A., Yingst, Samuel, Zaborsky, Jennifer, Zorman-Rojs, Olga, Ghedin, Elodie, Capua, Ilaria

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An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform von Fadrosh, Douglas W, Ma, Bing, Gajer, Pawel, Sengamalay, Naomi, Ott, Sandra, Brotman, Rebecca M, Ravel, Jacques

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Comparative Analysis of Genome of Ehrlichia sp. HF, a Model Bacterium to Study Fatal Human Ehrlichiosis von Lin, Mingqun, Xiong, Qingming, Chung, Matthew, Daugherty, Sean C., Nagaraj, Sushma, Sengamalay, Naomi, Ott, Sandra, Godinez, Al, Tallon, Luke J., Sadzewicz, Lisa, Fraser, Claire, Hotopp, Julie C. Dunning, Rikihisa, Yasuko

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Simultaneous transcriptional profiling of bacteria and their host cells von Humphrys, Michael S, Creasy, Todd, Sun, Yezhou, Shetty, Amol C, Chibucos, Marcus C, Drabek, Elliott F, Fraser, Claire M, Farooq, Umar, Sengamalay, Naomi, Ott, Sandy, Shou, Huizhong, Bavoil, Patrik M, Mahurkar, Anup, Myers, Garry S A

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Viral genome sequencing by random priming methods von Djikeng, Appolinaire, Halpin, Rebecca, Kuzmickas, Ryan, Depasse, Jay, Feldblyum, Jeremy, Sengamalay, Naomi, Afonso, Claudio, Zhang, Xinsheng, Anderson, Norman G, Ghedin, Elodie, Spiro, David J

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The evolutionary genetics and emergence of avian influenza viruses in wild birds von Dugan, Vivien G, Chen, Rubing, Spiro, David J, Sengamalay, Naomi, Zaborsky, Jennifer, Ghedin, Elodie, Nolting, Jacqueline, Swayne, David E, Runstadler, Jonathan A, Happ, George M, Senne, Dennis A, Wang, Ruixue, Slemons, Richard D, Holmes, Edward C, Taubenberger, Jeffery K

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Genome-wide diversity and gene expression profiling of Babesia microti isolates identify polymorphic genes that mediate host-pathogen interactions von Silva, Joana C., Cornillot, Emmanuel, McCracken, Carrie, Usmani-Brown, Sahar, Dwivedi, Ankit, Ifeonu, Olukemi O., Crabtree, Jonathan, Gotia, Hanzel T., Virji, Azan Z., Reynes, Christelle, Colinge, Jacques, Kumar, Vidya, Lawres, Lauren, Pazzi, Joseph E., Pablo, Jozelyn V., Hung, Chris, Brancato, Jana, Kumari, Priti, Orvis, Joshua, Tretina, Kyle, Chibucos, Marcus, Ott, Sandy, Sadzewicz, Lisa, Sengamalay, Naomi, Shetty, Amol C., Su, Qi, Tallon, Luke, Fraser, Claire M., Frutos, Roger, Molina, Douglas M., Krause, Peter J., Ben Mamoun, Choukri

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