Whole-exome sequencing reveals frequent genetic alterations in BAP1, NF2, CDKN2A, and CUL1 in malignant pleural mesothelioma von Guo, Guangwu, Chmielecki, Juliann, Goparaju, Chandra, Heguy, Adriana, Dolgalev, Igor, Carbone, Michele, Seepo, Sara, Meyerson, Matthew, Pass, Harvey I

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Paired exome analysis of Barrett's esophagus and adenocarcinoma von Stachler, Matthew D, Taylor-Weiner, Amaro, Peng, Shouyong, McKenna, Aaron, Agoston, Agoston T, Odze, Robert D, Davison, Jon M, Nason, Katie S, Loda, Massimo, Leshchiner, Ignaty, Stewart, Chip, Stojanov, Petar, Seepo, Sara, Lawrence, Michael S, Ferrer-Torres, Daysha, Lin, Jules, Chang, Andrew C, Gabriel, Stacey B, Lander, Eric S, Beer, David G, Getz, Gad, Carter, Scott L, Bass, Adam J

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Sooty mangabey genome sequence provides insight into AIDS resistance in a natural SIV host von Palesch, David, Bosinger, Steven E., Tharp, Gregory K., Vanderford, Thomas H., Paiardini, Mirko, Chahroudi, Ann, Johnson, Zachary P., Kirchhoff, Frank, Hahn, Beatrice H., Norgren, Robert B., Patel, Nirav B., Sodora, Donald L., Dawoud, Reem A., Stewart, Caro-Beth, Seepo, Sara M., Harris, R. Alan, Liu, Yue, Raveendran, Muthuswamy, Han, Yi, English, Adam, Thomas, Gregg W. C., Hahn, Matthew W., Pipes, Lenore, Mason, Christopher E., Muzny, Donna M., Gibbs, Richard A., Sauter, Daniel, Worley, Kim, Rogers, Jeffrey, Silvestri, Guido

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Systematic genomic and translational efficiency studies of uveal melanoma von Johnson, Chelsea Place, Kim, Ivana K, Esmaeli, Bita, Amin-Mansour, Ali, Treacy, Daniel J, Carter, Scott L, Hodis, Eran, Wagle, Nikhil, Seepo, Sara, Yu, Xiaoxing, Lane, Anne Marie, Gragoudas, Evangelos S, Vazquez, Francisca, Nickerson, Elizabeth, Cibulskis, Kristian, McKenna, Aaron, Gabriel, Stacey B, Getz, Gad, Van Allen, Eliezer M, 't Hoen, Peter A C, Garraway, Levi A, Woodman, Scott E

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Prospective Derivation of a Living Organoid Biobank of Colorectal Cancer Patients von van de Wetering, Marc, Francies, Hayley E., Francis, Joshua M., Bounova, Gergana, Iorio, Francesco, Pronk, Apollo, van Houdt, Winan, van Gorp, Joost, Taylor-Weiner, Amaro, Kester, Lennart, McLaren-Douglas, Anne, Blokker, Joyce, Jaksani, Sridevi, Bartfeld, Sina, Volckman, Richard, van Sluis, Peter, Li, Vivian S.W., Seepo, Sara, Sekhar Pedamallu, Chandra, Cibulskis, Kristian, Carter, Scott L., McKenna, Aaron, Lawrence, Michael S., Lichtenstein, Lee, Stewart, Chip, Koster, Jan, Versteeg, Rogier, van Oudenaarden, Alexander, Saez-Rodriguez, Julio, Vries, Robert G.J., Getz, Gad, Wessels, Lodewyk, Stratton, Michael R., McDermott, Ultan, Meyerson, Matthew, Garnett, Mathew J., Clevers, Hans

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Recurrent and functional regulatory mutations in breast cancer von Rheinbay, Esther, Parasuraman, Prasanna, Grimsby, Jonna, Tiao, Grace, Engreitz, Jesse M., Kim, Jaegil, Lawrence, Michael S., Taylor-Weiner, Amaro, Rodriguez-Cuevas, Sergio, Rosenberg, Mara, Hess, Julian, Stewart, Chip, Maruvka, Yosef E., Stojanov, Petar, Cortes, Maria L., Seepo, Sara, Cibulskis, Carrie, Tracy, Adam, Pugh, Trevor J., Lee, Jesse, Zheng, Zongli, Ellisen, Leif W., Iafrate, A. John, Boehm, Jesse S., Gabriel, Stacey B., Meyerson, Matthew, Golub, Todd R., Baselga, Jose, Hidalgo-Miranda, Alfredo, Shioda, Toshi, Bernards, Andre, Lander, Eric S., Getz, Gad

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The genomic landscape of pediatric Ewing sarcoma von Crompton, Brian D, Stewart, Chip, Taylor-Weiner, Amaro, Alexe, Gabriela, Kurek, Kyle C, Calicchio, Monica L, Kiezun, Adam, Carter, Scott L, Shukla, Sachet A, Mehta, Swapnil S, Thorner, Aaron R, de Torres, Carmen, Lavarino, Cinzia, Suñol, Mariona, McKenna, Aaron, Sivachenko, Andrey, Cibulskis, Kristian, Lawrence, Michael S, Stojanov, Petar, Rosenberg, Mara, Ambrogio, Lauren, Auclair, Daniel, Seepo, Sara, Blumenstiel, Brendan, DeFelice, Matthew, Imaz-Rosshandler, Ivan, Schwarz-Cruz Y Celis, Angela, Rivera, Miguel N, Rodriguez-Galindo, Carlos, Fleming, Mark D, Golub, Todd R, Getz, Gad, Mora, Jaume, Stegmaier, Kimberly

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The genomic landscape of juvenile myelomonocytic leukemia von Stieglitz, Elliot, Taylor-Weiner, Amaro N, Chang, Tiffany Y, Gelston, Laura C, Wang, Yong-Dong, Mazor, Tali, Esquivel, Emilio, Yu, Ariel, Seepo, Sara, Olsen, Scott R, Rosenberg, Mara, Archambeault, Sophie L, Abusin, Ghada, Beckman, Kyle, Brown, Patrick A, Briones, Michael, Carcamo, Benjamin, Cooper, Todd, Dahl, Gary V, Emanuel, Peter D, Fluchel, Mark N, Goyal, Rakesh K, Hayashi, Robert J, Hitzler, Johann, Hugge, Christopher, Liu, Y Lucy, Messinger, Yoav H, Mahoney, Donald H, Monteleone, Philip, Nemecek, Eneida R, Roehrs, Philip A, Schore, Reuven J, Stine, Kimo C, Takemoto, Clifford M, Toretsky, Jeffrey A, Costello, Joseph F, Olshen, Adam B, Stewart, Chip, Li, Yongjin, Ma, Jing, Gerbing, Robert B, Alonzo, Todd A, Getz, Gad, Gruber, Tanja A, Golub, Todd R, Stegmaier, Kimberly, Loh, Mignon L

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A shower of second hit events as the cause of multifocal renal cell carcinoma in tuberous sclerosis complex von Tyburczy, Magdalena E, Jozwiak, Sergiusz, Malinowska, Izabela A, Chekaluk, Yvonne, Pugh, Trevor J, Wu, Chin-Lee, Nussbaum, Robert L, Seepo, Sara, Dzik, Tomasz, Kotulska, Katarzyna, Kwiatkowski, David J

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Genomic Evolutionary Patterns of Leiomyosarcoma and Liposarcoma von Amin-Mansour, Ali, George, Suzanne, Sioletic, Stefano, Carter, Scott L, Rosenberg, Mara, Taylor-Weiner, Amaro, Stewart, Chip, Chevalier, Aaron, Seepo, Sara, Tracy, Adam, Getz, Gad, Hornick, Jason L, Nucci, Marisa R, Quade, Bradley, Demetri, George D, Raut, Chandrajit P, Garraway, Levi A, Van Allen, Eliezer M, Wagner, Andrew J

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Abstract 3017: Advancing PDX research through model, data, and bioinformatics with the PDXNet Portal von Koc, Soner, Lloyd, Mike, Neuhauser, Steven, Noodbakhsh, Javad, Srivastava, Anuj, Woo, Xing Yi, Jeon, Ryan, Grover, Jeffrey, Seepo, Sara, Frech, Christian, DiGiovanna, Jack, Consortium, PDXNet, Evard, Yvonne A., Wallace, Tiffany, Moscow, Jeffrey, Doroshow, James H., Mitsuade, Nicholas, Kaochar, Salma, Pan, Chong-xian, Chen, Moon S., Carvarjal-Carmona, Luis, Welm, Alana, Welm, Bryan, Lewis, Michael T., Ramaswamy, Govindan, Ding, Li, Li, Shunquang, Herlyn, Meenherd, Davies, Mike, Roth, Jack, Meric-Bernstam, Funda, Robinson, Peter, Bult, Carol J., Davis-Dusenbery, Brandi, Dean, Dennis A., Chuang, Jeffrey H.

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Genetic Effect of Chemotherapy Exposure in Children of Testicular Cancer Survivors von Kryukov, Gregory V, Bielski, Craig M, Samocha, Kaitlin, Fromer, Menachem, Seepo, Sara, Gentry, Carleen, Neale, Benjamin, Garraway, Levi A, Sweeney, Christopher J, Taplin, Mary-Ellen, Van Allen, Eliezer M

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Abstract A008: PanCAN SPARK: A cloud-based health data integration platform for pancreatic cancer data von Abdilleh, Kawther, Khalid, Omar, Ladnier, Dennis, Wan, Wenshuai, Seepo, Sara, Rupp, Garrett, Corelj, Valentin, Worman, Zelia F., Press, Bruce, DiGiovanna, Jack, Chandrashekhar, Satty, Collisson, Eric, Cui, Karen, Maitra, Anirban, Rejto, Paul A., White, Kevin, Matrisian, Lynn, Doss, Sudheer

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Transgenerational genomic effect of chemotherapy exposure in testicular cancer survivors von Van Allen, Eliezer Mendel, Kryukov, Gregory, Bielski, Craig, Samocha, Kaitlin, Fromer, Menachem, Seepo, Sara, Gentry, Carleen, Neale, Benjamin, Sweeney, Christopher, Garraway, Levi A., Taplin, Mary-Ellen

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Abstract PR07: Towards precision functional genomics via next-generation functional mapping of cancer variants von Berger, Alice H., Kim, Eejung, Brooks, Angela, Ilic, Nina, Shrestha, Yashaswi, Tseng, Yuen-Yi, Wu, Xiaoyun, Zou, Lihua, Kamburov, Atanas, Yang, Xiaoping, Zhu, Cong, Keskula, Paula, Seepo, Sara, Hong, Andrew, Kantoff, Philip, Ligon, Keith L., Garraway, Levi A., Doench, John G., Root, David E., Meyerson, Matthew, Hahn, William C., Getz, Gad, Golub, Todd R., Boehm, Jesse S.

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Abstract A1-15: Systematic genomic characterization of uveal melanoma von Place, Chelsea S., Kim, Ivana K., Esmaeli, Bita, Amin-Mansour, Ali, Treacy, Daniel J., Carter, Scott L., Hodis, Eran, Wagle, Nikhil, Seepo, Sara, Yu, Xiaoxing, Vazquez, Francisca, Nickerson, Elizabeth, Cibulskis, Kristian, McKenna, Aaron, Gabriel, Stacey B., Getz, Gad, Allen, Eliezer M. Van, Garraway, Levi A., Woodman, Scott E.

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Abstract 957: Towards precision functional genomics via next-generation functional mapping of cancer variants von Berger, Alice, Kim, Eejung, Brooks, Angela, Shrestha, Yashaswi, Tseng, Yuen-Yi, Wu, Xiaoyun, Ilic, Nina, Zou, Lihua, Kamburov, Atanas, Yang, Xiaoping, Zhu, Cong, Keskula, Paula, Seepo, Sara, Hong, Andrew, Doench, John, Subramanian, Aravind, Ligon, Keith, Kantoff, Philip, Janeway, Katherine, Garraway, Levi, Root, David, Golub, Todd, Meyerson, Matthew, Hahn, William, Getz, Gad, Boehm, Jesse

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Paired Exome Analysis of Barrett’s Esophagus and Adenocarcinoma von Stachler, Matthew D, Taylor-Weiner, Amaro, Peng, Shouyong, McKenna, Aaron, Agoston, Agoston T, Odze, Robert D, Davison, Jon M, Nason, Katie S, Loda, Massimo, Leshchiner, Ignaty, Stewart, Chip, Stojanov, Petar, Seepo, Sara, Lawrence, Michael S, Ferrer-Torres, Daysha, Lin, Jules, Chang, Andrew C, Gabriel, Stacey B, Lander, Eric S, Beer, David G, Getz, Gad, Carter, Scott L, Bass, Adam J

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Correction: Corrigendum: The genomic landscape of juvenile myelomonocytic leukemia von Stieglitz, Elliot, Taylor-Weiner, Amaro N, Chang, Tiffany Y, Gelston, Laura C, Wang, Yong-Dong, Mazor, Tali, Esquivel, Emilio, Yu, Ariel, Seepo, Sara, Olsen, Scott R, Rosenberg, Mara, Archambeault, Sophie L, Abusin, Ghada, Beckman, Kyle, Brown, Patrick A, Briones, Michael, Carcamo, Benjamin, Cooper, Todd, Dahl, Gary V, Emanuel, Peter D, Fluchel, Mark N, Goyal, Rakesh K, Hayashi, Robert J, Hitzler, Johann, Hugge, Christopher, Liu, Y Lucy, Messinger, Yoav H, Mahoney, Donald H, Monteleone, Philip, Nemecek, Eneida R, Roehrs, Philip A, Schore, Reuven J, Stine, Kimo C, Takemoto, Clifford M, Toretsky, Jeffrey A, Costello, Joseph F, Olshen, Adam B, Stewart, Chip, Li, Yongjin, Ma, Jing, Gerbing, Robert B, Alonzo, Todd A, Getz, Gad, Gruber, Tanja A, Golub, Todd R, Stegmaier, Kimberly, Loh, Mignon L

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MYB-QKI rearrangements in Angiocentric Glioma drive tumorigenicity through a tripartite mechanism von Bandopadhayay, Pratiti, Ramkissoon, Lori A, Jain, Payal, Bergthold, Guillaume, Wala, Jeremiah, Zeid, Rhamy, Schumacher, Steven E, Urbanski, Laura, O’Rourke, Ryan, Gibson, William J, Pelton, Kristine, Ramkissoon, Shakti H, Han, Harry J, Zhu, Yuankun, Choudhari, Namrata, Silva, Amanda, Boucher, Katie, Henn, Rosemary E, Kang, Yun Jee, Knoff, David, Paolella, Brenton R, Gladden-Young, Adrianne, Varlet, Pascale, Pages, Melanie, Horowitz, Peleg M, Federation, Alexander, Malkin, Hayley, Tracy, Adam, Seepo, Sara, Ducar, Matthew, Hummelen, Paul Van, Santi, Mariarita, Buccoliero, Anna Maria, Scagnet, Mirko, Bowers, Daniel C, Giannini, Caterina, Puget, Stephanie, Hawkins, Cynthia, Tabori, Uri, Klekner, Almos, Bognar, Laszlo, Burger, Peter C, Eberhart, Charles, Rodriguez, Fausto J, Hill, D. Ashley, Mueller, Sabine, Haas-Kogan, Daphne A, Phillips, Joanna J, Santagata, Sandro, Stiles, Charles D, Bradner, James E, Jabado, Nada, Goren, Alon, Grill, Jacques, Ligon, Azra H, Goumnerova, Liliana, Waanders, Angela J, Storm, Phillip B, Kieran, Mark W, Ligon, Keith L, Beroukhim, Rameen, Resnick, Adam C

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