Key experimental evidence of chromosomal DNA transfer among selected tuberculosis-causing mycobacteria von Boritsch, Eva C., Khanna, Varun, Pawlik, Alexandre, Honoré, Nadine, Navas, Victor H., Ma, Laurence, Bouchier, Christiane, Seemann, Torsten, Supply, Philip, Stinear, Timothy P., Brosch, Roland

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Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis von Supply, Philip, Marceau, Michael, Mangenot, Sophie, Roche, David, Rouanet, Carine, Khanna, Varun, Majlessi, Laleh, Criscuolo, Alexis, Tap, Julien, Pawlik, Alexandre, Fiette, Laurence, Orgeur, Mickael, Fabre, Michel, Parmentier, Cécile, Frigui, Wafa, Simeone, Roxane, Boritsch, Eva C, Debrie, Anne-Sophie, Willery, Eve, Walker, Danielle, Quail, Michael A, Ma, Laurence, Bouchier, Christiane, Salvignol, Grégory, Sayes, Fadel, Cascioferro, Alessandro, Seemann, Torsten, Barbe, Valérie, Locht, Camille, Gutierrez, Maria-Cristina, Leclerc, Claude, Bentley, Stephen D, Stinear, Timothy P, Brisse, Sylvain, Médigue, Claudine, Parkhill, Julian, Cruveiller, Stéphane, Brosch, Roland

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Multiple introductions and recent spread of the emerging human pathogen Mycobacterium ulcerans across Africa Running title: Population genomics of M. ulcerans in Africa: Population... von Vandelannoote, Koen, Meehan, Conor C, Eddyani, Miriam, Affolabi, Dissou C, Phanzu, Delphin C, Eyangoh, Sara C, Jordaens, Kurt C, Portaels, Françoise P, Mangas, Kirstie, Seemann, Torsten C, Marsollier, Laurent C, Marion, Estelle C, Chauty, Annick C, Landier, Jordi C, Fontanet, Arnaud P, Leirs, Herwig, Stinear, Timothy P, de Jong, Bouke C

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Optimising genomic approaches for identifying vancomycin-resistant Enterococcus faecium transmission in healthcare settings von Higgs, Charlie, Sherry, Norelle L., Seemann, Torsten, Horan, Kristy, Walpola, Hasini, Kinsella, Paul, Bond, Katherine, Williamson, Deborah A., Marshall, Caroline, Kwong, Jason C., Grayson, M. Lindsay, Stinear, Timothy P., Gorrie, Claire L., Howden, Benjamin P.

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Prospective Whole-Genome Sequencing Enhances National Surveillance of Listeria monocytogenes von Kwong, Jason C, Mercoulia, Karolina, Tomita, Takehiro, Easton, Marion, Li, Hua Y, Bulach, Dieter M, Stinear, Timothy P, Seemann, Torsten, Howden, Benjamin P

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Niche-specific genome degradation and convergent evolution shaping Staphylococcus aureus adaptation during severe infections von Giulieri, Stefano G, Guérillot, Romain, Duchene, Sebastian, Hachani, Abderrahman, Daniel, Diane, Seemann, Torsten, Davis, Joshua S, Tong, Steven Y C, Young, Bernadette C, Wilson, Daniel J, Stinear, Timothy P, Howden, Benjamin P

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Bridging of Neisseria gonorrhoeae lineages across sexual networks in the HIV pre-exposure prophylaxis era von Williamson, Deborah A., Chow, Eric P. F., Gorrie, Claire L., Seemann, Torsten, Ingle, Danielle J., Higgins, Nasra, Easton, Marion, Taiaroa, George, Grad, Yonatan H., Kwong, Jason C., Fairley, Christopher K., Chen, Marcus Y., Howden, Benjamin P.

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SARS-CoV-2 infection results in immune responses in the respiratory tract and peripheral blood that suggest mechanisms of disease severity von Zhang, Wuji, Chua, Brendon Y., Selva, Kevin J., Kedzierski, Lukasz, Ashhurst, Thomas M., Haycroft, Ebene R., Shoffner-Beck, Suzanne K., Hensen, Luca, Boyd, David F., James, Fiona, Mouhtouris, Effie, Kwong, Jason C., Chua, Kyra Y. L., Drewett, George, Copaescu, Ana, Dobson, Julie E., Rowntree, Louise C., Habel, Jennifer R., Allen, Lilith F., Koay, Hui-Fern, Neil, Jessica A., Gartner, Matthew J., Lee, Christina Y., Andersson, Patiyan, Khan, Sadid F., Blakeway, Luke, Wisniewski, Jessica, McMahon, James H., Vine, Erica E., Cunningham, Anthony L., Audsley, Jennifer, Thevarajan, Irani, Seemann, Torsten, Sherry, Norelle L., Amanat, Fatima, Krammer, Florian, Londrigan, Sarah L., Wakim, Linda M., King, Nicholas J. C., Godfrey, Dale I., Mackay, Laura K., Thomas, Paul G., Nicholson, Suellen, Arnold, Kelly B., Chung, Amy W., Holmes, Natasha E., Smibert, Olivia C., Trubiano, Jason A., Gordon, Claire L., Nguyen, Thi H. O., Kedzierska, Katherine

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Validation of a single-step, single-tube reverse transcription loop-mediated isothermal amplification assay for rapid detection of SARS-CoV-2 RNA von Lee, Jean Y H, Best, Nickala, McAuley, Julie, Porter, Jessica L, Seemann, Torsten, Schultz, Mark B, Sait, Michelle, Orlando, Nicole, Mercoulia, Karolina, Ballard, Susan A, Druce, Julian, Tran, Thomas, Catton, Mike G, Pryor, Melinda J, Cui, Huanhuan L, Luttick, Angela, McDonald, Sean, Greenhalgh, Arran, Kwong, Jason C, Sherry, Norelle L, Graham, Maryza, Hoang, Tuyet, Herisse, Marion, Pidot, Sacha J, Williamson, Deborah A, Howden, Benjamin P, Monk, Ian R, Stinear, Timothy P

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Genomic epidemiology and antimicrobial resistance of Neisseria gonorrhoeae in New Zealand von Lee, Robyn S, Seemann, Torsten, Heffernan, Helen, Kwong, Jason C, Gonçalves da Silva, Anders, Carter, Glen P, Woodhouse, Rosemary, Dyet, Kristin H, Bulach, Dieter M, Stinear, Timothy P, Howden, Benjamin P, Williamson, Deborah A

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A glimpse into the past and predictions for the future: the molecular evolution of the tuberculosis agent von Boritsch, Eva C., Supply, Philip, Honoré, Nadine, Seeman, Torsten, Stinear, Timothy P., Brosch, Roland

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Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis von Stinear, Timothy P, Seemann, Torsten, Harrison, Paul F, Jenkin, Grant A, Davies, John K, Johnson, Paul D R, Abdellah, Zahra, Arrowsmith, Claire, Chillingworth, Tracey, Churcher, Carol, Clarke, Kay, Cronin, Ann, Davis, Paul, Goodhead, Ian, Holroyd, Nancy, Jagels, Kay, Lord, Angela, Moule, Sharon, Mungall, Karen, Norbertczak, Halina, Quail, Michael A, Rabbinowitsch, Ester, Walker, Danielle, White, Brian, Whitehead, Sally, Small, Pamela L C, Brosch, Roland, Ramakrishnan, Lalita, Fischbach, Michael A, Parkhill, Julian, Cole, Stewart T

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Comprehensive Genomic Investigation of Adaptive Mutations Driving the Low-Level Oxacillin Resistance Phenotype in Staphylococcus aureus von Giulieri, Stefano G, Guérillot, Romain, Kwong, Jason C, Monk, Ian R, Hayes, Ashleigh S, Daniel, Diane, Baines, Sarah, Sherry, Norelle L, Holmes, Natasha E, Ward, Peter, Gao, Wei, Seemann, Torsten, Stinear, Timothy P, Howden, Benjamin P

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Genomic insights to control the emergence of vancomycin-resistant enterococci von Howden, Benjamin P, Holt, Kathryn E, Lam, Margaret M C, Seemann, Torsten, Ballard, Susan, Coombs, Geoffrey W, Tong, Steven Y C, Grayson, M Lindsay, Johnson, Paul D R, Stinear, Timothy P

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Genomic exploration of sequential clinical isolates reveals a distinctive molecular signature of persistent Staphylococcus aureus bacteraemia von Giulieri, Stefano G, Baines, Sarah L, Guerillot, Romain, Seemann, Torsten, Gonçalves da Silva, Anders, Schultz, Mark, Massey, Ruth C, Holmes, Natasha E, Stinear, Timothy P, Howden, Benjamin P

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Comparative Analysis of the First Complete Enterococcus faecium Genome von Lam, Margaret M. C, Seemann, Torsten, Bulach, Dieter M, Gladman, Simon L, Chen, Honglei, Haring, Volker, Moore, Robert J, Ballard, Susan, Grayson, M. Lindsay, Johnson, Paul D. R, Howden, Benjamin P, Stinear, Timothy P

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Genome Sequence of the Saprophyte Leptospira biflexa Provides Insights into the Evolution of Leptospira and the Pathogenesis of Leptospirosis von Picardeau, Mathieu, Bulach, Dieter M, Bouchier, Christiane, Zuerner, Richard L, Zidane, Nora, Wilson, Peter J, Creno, Sophie, Kuczek, Elizabeth S, Bommezzadri, Simona, Davis, John C, McGrath, Annette, Johnson, Matthew J, Boursaux-Eude, Caroline, Seemann, Torsten, Rouy, Zoé, Coppel, Ross L, Rood, Julian I, Lajus, Aurélie, Davies, John K, Médigue, Claudine, Adler, Ben, Davis, Dana

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Capacity To Utilize Raffinose Dictates Pneumococcal Disease Phenotype von Minhas, Vikrant, Harvey, Richard M, McAllister, Lauren J, Seemann, Torsten, Syme, Anna E, Baines, Sarah L, Paton, James C, Trappetti, Claudia

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Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer von Stinear, Timothy P, Seemann, Torsten, Pidot, Sacha, Frigui, Wafa, Reysset, Gilles, Garnier, Thierry, Meurice, Guillaume, Simon, David, Bouchier, Christiane, Ma, Laurence, Tichit, Magali, Porter, Jessica L, Ryan, Janine, Johnson, Paul D R, Davies, John K, Jenkin, Grant A, Small, Pamela L C, Jones, Louis M, Tekaia, Fredj, Laval, Françoise, Daffé, Mamadou, Parkhill, Julian, Cole, Stewart T

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Co-circulation of Multidrug-resistant Shigella Among Men Who Have Sex With Men in Australia von Ingle, Danielle J, Easton, Marion, Valcanis, Mary, Seemann, Torsten, Kwong, Jason C, Stephens, Nicola, Carter, Glen P, Gonçalves da Silva, Anders, Adamopoulos, James, Baines, Sarah L, Holt, Kathryn E, Chow, Eric P F, Fairley, Christopher K, Chen, Marcus Y, Kirk, Martyn D, Howden, Benjamin P, Williamson, Deborah A

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