HLA Typing: Methods and Protocols von Boegel, Sebastian

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HLA Typing: Methods and Protocols

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EPIC: A Tool to Estimate the Proportions of Different Cell Types from Bulk Gene Expression Data von Racle, Julien, Gfeller, David

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Immunedeconv: An R Package for Unified Access to Computational Methods for Estimating Immune Cell Fractions from Bulk RNA-Sequencing Data von Sturm, Gregor, Finotello, Francesca, List, Markus

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Cell-Type Enrichment Analysis of Bulk Transcriptomes Using xCell von Aran, Dvir

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Transcriptome analysis of renal ischemia/reperfusion (I/R) injury in BAFF and BAFF-R deficient mice von Möckel, Tamara, Boegel, Sebastian, Schwarting, Andreas

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Bioinformatics for Cancer Immunotherapy: Methods and Protocols von Boegel, Sebastian

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Transcriptome Analysis of BAFF/BAFF-R System in Murine Nephrotoxic Serum Nephritis von Möckel, Tamara, Boegel, Sebastian, Schwarting, Andreas

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Multi-Omics Characterization of the 4T1 Murine Mammary Gland Tumor Model von Schrörs, Barbara, Boegel, Sebastian, Albrecht, Christian, Bukur, Thomas, Bukur, Valesca, Holtsträter, Christoph, Ritzel, Christoph, Manninen, Katja, Tadmor, Arbel D., Vormehr, Mathias, Sahin, Ugur, Löwer, Martin

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Exploiting the Mutanome for Tumor Vaccination von CASTLE, John C, KREITER, Sebastian, KOSLOWSKI, Michael, KUHN, Andreas N, BRITTEN, Cedrik M, HUBER, Christoph, TÜRECI, Ozlem, SAHIN, Ugur, DIEKMANN, Jan, LÖWER, Martin, DE ROEMER, Niels Van, DE GRAAF, Jos, SELMI, Abderraouf, DIKEN, Mustafa, BOEGEL, Sebastian, PARET, Claudia

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Immunomic, genomic and transcriptomic characterization of CT26 colorectal carcinoma von Castle, John C, Loewer, Martin, Boegel, Sebastian, de Graaf, Jos, Bender, Christian, Tadmor, Arbel D, Boisguerin, Valesca, Bukur, Thomas, Sorn, Patrick, Paret, Claudia, Diken, Mustafa, Kreiter, Sebastian, Türeci, Özlem, Sahin, Ugur

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Bioinformatics for Cancer Immunotherapy von Holtsträter, Christoph, Schrörs, Barbara, Bukur, Thomas, Löwer, Martin

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HLA and proteasome expression body map von Boegel, Sebastian, Löwer, Martin, Bukur, Thomas, Sorn, Patrick, Castle, John C, Sahin, Ugur

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Computational Deconvolution of Tumor-Infiltrating Immune Components with Bulk Tumor Gene Expression Data von Li, Bo, Li, Taiwen, Liu, Jun S., Liu, X. Shirley

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OpenVax: An Open-Source Computational Pipeline for Cancer Neoantigen Prediction von Kodysh, Julia, Rubinsteyn, Alex

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Cap Analysis of Gene Expression (CAGE): A Quantitative and Genome-Wide Assay of Transcription Start Sites von Morioka, Masaki Suimye, Kawaji, Hideya, Nishiyori-Sueki, Hiromi, Murata, Mitsuyoshi, Kojima-Ishiyama, Miki, Carninci, Piero, Itoh, Masayoshi

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NMDA Receptors in Health and Diseases: New Roles and Signaling Pathways-Anti-N-Methyl-D-Aspartate Receptor (NMDAR) Autoantibodies as Potential Biomarkers of Fatigue in Patients wit... von Marinoska, Tatjana, Möckel, Tamara, Triantafyllias, Konstantinos, Boegel, Sebastian, Dreher, Matthias, Luessi, Felix, Schwarting, Andreas

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The SysteMHC Atlas: a Computational Pipeline, a Website, and a Data Repository for Immunopeptidomic Analyses von Shao, Wenguang, Caron, Etienne, Pedrioli, Patrick, Aebersold, Ruedi

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A catalog of HLA type, HLA expression, and neo-epitope candidates in human cancer cell lines von Boegel, Sebastian, Löwer, Martin, Bukur, Thomas, Sahin, Ugur, Castle, John C

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PHLAT: Inference of High-Resolution HLA Types from RNA and Whole Exome Sequencing von Bai, Yu, Wang, David, Fury, Wen

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