Frontiers in metabolic reconstruction and modeling of plant genomes von Seaver, Samuel M. D., Henry, Christopher S., Hanson, Andrew D.

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High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource von Seaver, Samuel M. D., Gerdes, Svetlana, Frelin, Océane, Lerma-Ortiz, Claudia, Bradbury, Louis M. T., Zallot, Rémi, Hasnain, Ghulam, Niehaus, Thomas D., Yacoubi, Basma El, Pasternak, Shiran, Olson, Robert, Pusch, Gordon, Overbeek, Ross, Stevens, Rick, de Crécy-Lagard, Valérie, Ware, Doreen, Hanson, Andrew D., Henry, Christopher S.

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Metabolomic Profiling of the Nectars of Aquilegia pubescens and A. Canadensis von Noutsos, Christos, Perera, Ann M, Nikolau, Basil J, Seaver, Samuel M D, Ware, Doreen H

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Plant B Vitamin Pathways and their Compartmentation: a Guide for the Perplexed von Gerdes, Svetlana, Lerma-Ortiz, Claudia, Frelin, Océane, Seaver, Samuel M. D, Henry, Christopher S, de Crécy-Lagard, Valérie, Hanson, Andrew D

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Systems-level analysis of the plasticity of the maize metabolic network reveals novel hypotheses in the nitrogen-use efficiency of maize roots von Seaver, Samuel M D

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Correction: Metabolomic Profiling of the Nectars of Aquilegia pubescens and A. Canadensis von Noutsos, Christos, Perera, Ann M, Nikolau, Basil J, Seaver, Samuel M D, Ware, Doreen H

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KBase: The United States Department of Energy Systems Biology Knowledgebase von Arkin, Adam P, Cottingham, Robert W, Henry, Christopher S, Harris, Nomi L, Stevens, Rick L, Maslov, Sergei, Dehal, Paramvir, Ware, Doreen, Perez, Fernando, Canon, Shane, Sneddon, Michael W, Henderson, Matthew L, Riehl, William J, Murphy-Olson, Dan, Chan, Stephen Y, Kamimura, Roy T, Kumari, Sunita, Drake, Meghan M, Brettin, Thomas S, Glass, Elizabeth M, Chivian, Dylan, Gunter, Dan, Weston, David J, Allen, Benjamin H, Baumohl, Jason, Best, Aaron A, Bowen, Ben, Brenner, Steven E, Bun, Christopher C, Chandonia, John-Marc, Chia, Jer-Ming, Colasanti, Ric, Conrad, Neal, Davis, James J, Davison, Brian H, DeJongh, Matthew, Devoid, Scott, Dietrich, Emily, Dubchak, Inna, Edirisinghe, Janaka N, Fang, Gang, Faria, José P, Frybarger, Paul M, Gerlach, Wolfgang, Gerstein, Mark, Greiner, Annette, Gurtowski, James, Haun, Holly L, He, Fei, Jain, Rashmi, Joachimiak, Marcin P, Keegan, Kevin P, Kondo, Shinnosuke, Kumar, Vivek, Land, Miriam L, Meyer, Folker, Mills, Marissa, Novichkov, Pavel S, Oh, Taeyun, Olsen, Gary J, Olson, Robert, Parrello, Bruce, Pasternak, Shiran, Pearson, Erik, Poon, Sarah S, Price, Gavin A, Ramakrishnan, Srividya, Ranjan, Priya, Ronald, Pamela C, Schatz, Michael C, Seaver, Samuel M D, Shukla, Maulik, Sutormin, Roman A, Syed, Mustafa H, Thomason, James, Tintle, Nathan L, Wang, Daifeng, Xia, Fangfang, Yoo, Hyunseung, Yoo, Shinjae, Yu, Dantong

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The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes von Seaver, Samuel M D, Liu, Filipe, Zhang, Qizhi, Jeffryes, James, Faria, José P, Edirisinghe, Janaka N, Mundy, Michael, Chia, Nicholas, Noor, Elad, Beber, Moritz E, Best, Aaron A, DeJongh, Matthew, Kimbrel, Jeffrey A, D’haeseleer, Patrik, McCorkle, Sean R, Bolton, Jay R, Pearson, Erik, Canon, Shane, Wood-Charlson, Elisha M, Cottingham, Robert W, Arkin, Adam P, Henry, Christopher S

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Genome-scale modeling of the primary-specialized metabolism interface von Beilsmith, Kathleen, Henry, Christopher S., Seaver, Samuel M.D.

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Phenomenological model for predicting the catabolic potential of an arbitrary nutrient von Seaver, Samuel M D, Sales-Pardo, Marta, Guimerà, Roger, Amaral, Luís A Nunes

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Integration of Plant Metabolomics Data with Metabolic Networks: Progresses and Challenges von Töpfer, Nadine, Seaver, Samuel M. D., Aharoni, Asaph

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PlantSEED enables automated annotation and reconstruction of plant primary metabolism with improved compartmentalization and comparative consistency von Seaver, Samuel M. D., Lerma‐Ortiz, Claudia, Conrad, Neal, Mikaili, Arman, Sreedasyam, Avinash, Hanson, Andrew D., Henry, Christopher S.

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A pathway for every product? Tools to discover and design plant metabolism von Jeffryes, James G., Seaver, Samuel M.D., Faria, José P., Henry, Christopher S.

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Improved evidence-based genome-scale metabolic models for maize leaf, embryo, and endosperm von Seaver, Samuel M D, Bradbury, Louis M T, Frelin, Océane, Zarecki, Raphy, Ruppin, Eytan, Hanson, Andrew D, Henry, Christopher S

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The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes von Seaver, Samuel M D, Liu, Filipe, Zhang, Qizhi, Jeffryes, James, Faria, José P, Edirisinghe, Janaka N, Mundy, Michael, Chia, Nicholas, Noor, Elad, Beber, Moritz E, Best, Aaron A, DeJongh, Matthew, Kimbrel, Jeffrey A, D’haeseleer, Patrik, McCorkle, Sean R, Bolton, Jay R, Pearson, Erik, Canon, Shane, Wood-Charlson, Elisha M, Cottingham, Robert W, Arkin, Adam P, Henry, Christopher S

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Monster: inferring non-covalent interactions in macromolecular structures from atomic coordinate data von Salerno, William J., Seaver, Samuel M., Armstrong, Brian R., Radhakrishnan, Ishwar

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PlantSEED enables automated annotation and reconstruction of plant primary metabolism with improved compartmentalization and comparative consistency von Seaver, Samuel M. D., Lerma-Ortiz, Claudia, Conrad, Neal, Mikaili, Arman, Sreedasyam, Avinash, Hanson, Andrew D., Henry, Christopher S.

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Improved evidence-based genome-scale metabolic models for maize leaf, embryo, and endosperm von Seaver, Samuel M. D., Bradbury, Louis M. T., Frelin, Océane, Zarecki, Raphy, Ruppin, Eytan, Hanson, Andrew D., Henry, Christopher S.

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A KBase case study on genome-wide transcriptomics and plant primary metabolism in response to drought stress in Sorghum von Kumari, Sunita, Kumar, Vivek, Beilsmith, Kathleen, Seaver, Samuel M.D., Canon, Shane, Dehal, Paramvir, Gu, Tian, Joachimiak, Marcin, Lerma-Ortiz, Claudia, Liu, Filipe, Lu, Zhenyuan, Pearson, Eric, Ranjan, Priya, Riel, William, Henry, Christopher S., Arkin, Adam P., Ware, Doreen

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Constructing and Analyzing Metabolic Flux Models of Microbial Communities von Faria, José P., Khazaei, Tahmineh, Edirisinghe, Janaka N., Weisenhorn, Pamela, Seaver, Samuel M. D., Conrad, Neal, Harris, Nomi, DeJongh, Matthew, Henry, Christopher S.

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