Cytoscape: a software environment for integrated models of biomolecular interaction networks von Shannon, Paul, Markiel, Andrew, Ozier, Owen, Baliga, Nitin S, Wang, Jonathan T, Ramage, Daniel, Amin, Nada, Schwikowski, Benno, Ideker, Trey

Volltext

A network of protein-protein interactions in yeast von Schwikowski, Benno, Uetz, Peter, Fields, Stanley

Volltext

Discovering regulatory and signalling circuits in molecular interaction networks von Ideker, Trey, Ozier, Owen, Schwikowski, Benno, Siegel, Andrew F.

Volltext

ProbID: A probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data von Zhang, Ning, Aebersold, Ruedi, Schwikowski, Benno

Volltext

GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring von Garcia, Olivier, Saveanu, Cosmin, Cline, Melissa, Fromont-Racine, Micheline, Jacquier, Alain, Schwikowski, Benno, Aittokallio, Tero

Volltext

Signal Maps for Mass Spectrometry-based Comparative Proteomics von Prakash, Amol, Mallick, Parag, Whiteaker, Jeffrey, Zhang, Heidi, Paulovich, Amanda, Flory, Mark, Lee, Hookeun, Aebersold, Ruedi, Schwikowski, Benno

Volltext

Universal DNA tag systems: a combinatorial design scheme von Ben-Dor, A, Karp, R, Schwikowski, B, Yakhini, Z

Volltext

Algorithms for phylogenetic footprinting von Blanchette, Mathieu, Schwikowski, Benno, Tompa, Martin

Volltext

ProblDtree: An automated software program capable of identifying multiple peptides from a single collision-induced dissociation spectrum collected by a tandem mass spectrometer von NING ZHANG, LI, Xiao-Jun, MINGLIANG YE, SHENG PAN, SCHWIKOWSKI, Benno, AEBERSOLD, Ruedi

Volltext

Predicting protein–peptide interactions via a network-based motif sampler von Reiss, David J., Schwikowski, Benno

Volltext

On enumerating all minimal solutions of feedback problems von SCHWIKOWSKI, Benno, SPECKENMEYER, Ewald

Volltext

From the exposome to mechanistic understanding of chemical-induced adverse effects von Escher, BI, Hackermuller, J, Polte, T, Scholz, S, Aigner, A, Altenburger, R, Boehme, A, Bopp, SK, Brack, W, Busch, W, Chadeau-Hyam, M, Covaci, A, Eisentraeger, A, Galligan, JJ, Garcia-Reyero, N, Hartung, T, Hein, M, Herberth, G, Jahnke, A, Kleinjans, J, Kluever, N, Krauss, M, Lamoree, M, Lehmann, I, Luckenbach, T, Miller, GW, Mueller, A, Phillips, DH, Reemtsma, T, Rolle-Kampczyk, U, Schueuermann, G, Schwikowski, B, Tan, Y-M, Trump, S, Walter-Rohde, S, Wambaugh, JF

Volltext

Detecting multi-way epistasis in family-based association studies von Loucoubar, Cheikh, Grant, Audrey V, Bureau, Jean-François, Casademont, Isabelle, Bar, Ndjido Ardo, Bar-Hen, Avner, Diop, Mamadou, Faye, Joseph, Sarr, Fatoumata Diene, Badiane, Abdoulaye, Tall, Adama, Trape, Jean-François, Cliquet, Freddy, Schwikowski, Benno, Lathrop, Mark, Paul, Richard Edward, Sakuntabhai, Anavaj

Volltext

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis von Nicolas, P., Mader, U., Dervyn, Etienne, Rochat, T., Leduc, A., Pigeonneau, N., Marchadier, E., Hoebeke, M., Aymerich, S., Becher, D., Bisicchia, P., Botella, E., Delumeau, O., Doherty, G., Denham, E., Fogg, M., Fromion, V., Goelzer, A., Hansen, A., Hartig, E., Harwood, C., Homuth, G., Jarmer, H., Jules, M., Klipp, E., Le Chat, L., Lecointe, F., Lewis, P., Liebermeister, W., March, A., Mars, R., Nannapaneni, P., Noone, D., Pohl, S., Rinn, B., Rugheimer, F., Sappa, P., Samson, F., Schaffer, M., Schwikowski, B., Steil, L., Stulke, J., Wiegert, T., Devine, K., Wilkinson, A., Maarten van Dijl, J., Hecker, M., Volker, U., Bessieres, P., Noirot, P., Steczkiewicz, Kamil, Prestel, Eric, Bidnenko, Elena, Szczepankowska, Agnieszka

Volltext

Tools enabling the elucidation of molecular pathways active in human disease: application to Hepatitis C virus infection von Reiss, David J, Avila-Campillo, Iliana, Thorsson, Vesteinn, Schwikowski, Benno, Galitski, Timothy

Volltext

Weighted sequence graphs: boosting iterated dynamic programming using locally suboptimal solutions von Schwikowski, Benno, Vingron, Martin

Volltext

The restriction scaffold problem von Ben-Dor, Amir, Karp, Richard M, Schwikowski, Benno, Shamir, Ron

Volltext

The deferred path heuristic for the generalized tree alignment problem von Schwikowski, B, Vingron, M

Volltext

Anthropogenic versus natural sources of atmospheric sulphate from an Alpine ice core von SCHWIKOWSKI, BY M., DÖSCHER, A., GÄGGELER, H.W., SCHOTTERER, U.

Volltext

Towards Optimally Multiplexed Applications of Universal Arrays von Ben-Dor, A, Hartman, T, Karp, R M, Schwikowski, B, Sharan, R, Yakhini, Z

Volltext