Insights into the phylogeny and coding potential of microbial dark matter von Rinke, Christian, Schwientek, Patrick, Sczyrba, Alexander, Ivanova, Natalia N., Anderson, Iain J., Cheng, Jan-Fang, Darling, Aaron, Malfatti, Stephanie, Swan, Brandon K., Gies, Esther A., Dodsworth, Jeremy A., Hedlund, Brian P., Tsiamis, George, Sievert, Stefan M., Liu, Wen-Tso, Eisen, Jonathan A., Hallam, Steven J., Kyrpides, Nikos C., Stepanauskas, Ramunas, Rubin, Edward M., Hugenholtz, Philip, Woyke, Tanja

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Strain-specific quantification of root colonization by plant growth promoting rhizobacteria Bacillus firmus I-1582 and Bacillus amyloliquefaciens QST713 in non-sterile soil and fie... von Mendis, Hajeewaka C, Thomas, Varghese P, Schwientek, Patrick, Salamzade, Rauf, Chien, Jung-Ting, Waidyarathne, Pramuditha, Kloepper, Joseph, De La Fuente, Leonardo

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UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota von Campbell, James H., O'Donoghue, Patrick, Campbell, Alisha G., Schwientek, Patrick, Sczyrba, Alexander, Woyke, Tanja, Söll, Dieter, Podar, Mircea

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Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges von Kamke, Janine, Sczyrba, Alexander, Ivanova, Natalia, Schwientek, Patrick, Rinke, Christian, Mavromatis, Kostas, Woyke, Tanja, Hentschel, Ute

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Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean von Swan, Brandon K., Tupper, Ben, Sczyrba, Alexander, Lauro, Federico M., Martinez-Garcia, Manuel, González, José M., Luo, Haiwei, Wright, Jody J., Landry, Zachary C., Hanson, Niels W., Thompson, Brian P., Poulton, Nicole J., Schwientek, Patrick, Acinas, Silvia G., Giovannoni, Stephen J., Moran, Mary Ann, Hallam, Steven J., Cavicchioli, Ricardo, Woyke, Tanja, Stepanauskas, Ramunas

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Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations von Bendall, Matthew L, Stevens, Sarah LR, Chan, Leong-Keat, Malfatti, Stephanie, Schwientek, Patrick, Tremblay, Julien, Schackwitz, Wendy, Martin, Joel, Pati, Amrita, Bushnell, Brian, Froula, Jeff, Kang, Dongwan, Tringe, Susannah G, Bertilsson, Stefan, Moran, Mary A, Shade, Ashley, Newton, Ryan J, McMahon, Katherine D, Malmstrom, Rex R

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Diverse Marinimicrobia bacteria may mediate coupled biogeochemical cycles along eco-thermodynamic gradients von Hawley, Alyse K., Nobu, Masaru K., Wright, Jody J., Durno, W. Evan, Morgan-Lang, Connor, Sage, Brent, Schwientek, Patrick, Swan, Brandon K., Rinke, Christian, Torres-Beltrán, Monica, Mewis, Keith, Liu, Wen-Tso, Stepanauskas, Ramunas, Woyke, Tanja, Hallam, Steven J.

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Stop codon reassignments in the wild von Ivanova, Natalia N., Schwientek, Patrick, Tripp, H. James, Rinke, Christian, Pati, Amrita, Huntemann, Marcel, Visel, Axel, Woyke, Tanja, Kyrpides, Nikos C., Rubin, Edward M.

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Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics von Roux, Simon, Hawley, Alyse K, Torres Beltran, Monica, Scofield, Melanie, Schwientek, Patrick, Stepanauskas, Ramunas, Woyke, Tanja, Hallam, Steven J, Sullivan, Matthew B

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Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage von Ghylin, Trevor W, Garcia, Sarahi L, Moya, Francisco, Oyserman, Ben O, Schwientek, Patrick, Forest, Katrina T, Mutschler, James, Dwulit-Smith, Jeffrey, Chan, Leong-Keat, Martinez-Garcia, Manuel, Sczyrba, Alexander, Stepanauskas, Ramunas, Grossart, Hans-Peter, Woyke, Tanja, Warnecke, Falk, Malmstrom, Rex, Bertilsson, Stefan, McMahon, Katherine D

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Phylogeny and physiology of candidate phylum ‘Atribacteria’ (OP9/JS1) inferred from cultivation-independent genomics von Nobu, Masaru K, Dodsworth, Jeremy A, Murugapiran, Senthil K, Rinke, Christian, Gies, Esther A, Webster, Gordon, Schwientek, Patrick, Kille, Peter, Parkes, R John, Sass, Henrik, Jørgensen, Bo B, Weightman, Andrew J, Liu, Wen-Tso, Hallam, Steven J, Tsiamis, George, Woyke, Tanja, Hedlund, Brian P

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The candidate phylum Poribacteria by single-cell genomics: new insights into phylogeny, cell-compartmentation, eukaryote-like repeat proteins, and other genomic features von Kamke, Janine, Rinke, Christian, Schwientek, Patrick, Mavromatis, Kostas, Ivanova, Natalia, Sczyrba, Alexander, Woyke, Tanja, Hentschel, Ute

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The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110 von Schwientek, Patrick, Szczepanowski, Rafael, Rückert, Christian, Kalinowski, Jörn, Klein, Andreas, Selber, Klaus, Wehmeier, Udo F, Stoye, Jens, Pühler, Alfred

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Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria von Eiler, Alexander, Mondav, Rhiannon, Sinclair, Lucas, Fernandez-Vidal, Leyden, Scofield, Douglas G, Schwientek, Patrick, Martinez-Garcia, Manuel, Torrents, David, McMahon, Katherine D, Andersson, Siv GE, Stepanauskas, Ramunas, Woyke, Tanja, Bertilsson, Stefan

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Multiple single-cell genomes provide insight into functions of uncultured Deltaproteobacteria in the human oral cavity von Campbell, Alisha G, Campbell, James H, Schwientek, Patrick, Woyke, Tanja, Sczyrba, Alexander, Allman, Steve, Beall, Clifford J, Griffen, Ann, Leys, Eugene, Podar, Mircea

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Myocardial transcriptome analysis of human arrhythmogenic right ventricular cardiomyopathy von Gaertner, Anna, Schwientek, Patrick, Ellinghaus, Peter, Summer, Holger, Golz, Stefan, Kassner, Astrid, Schulz, Uwe, Gummert, Jan, Milting, Hendrik

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Reconstructing each cell's genome within complex microbial communities—dream or reality? von Clingenpeel, Scott, Clum, Alicia, Schwientek, Patrick, Rinke, Christian, Woyke, Tanja

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A single-cell genomics pipeline for environmental microbial eukaryotes von Ciobanu, Doina, Clum, Alicia, Ahrendt, Steven, Andreopoulos, William B., Salamov, Asaf, Chan, Sandy, Quandt, C. Alisha, Foster, Brian, Meier-Kolthoff, Jan P., Tang, Yung Tsu, Schwientek, Patrick, Benny, Gerald L., Smith, Matthew E., Bauer, Diane, Deshpande, Shweta, Barry, Kerrie, Copeland, Alex, Singer, Steven W., Woyke, Tanja, Grigoriev, Igor V., James, Timothy Y., Cheng, Jan-Fang

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Effects of sample treatments on genome recovery via single-cell genomics von Clingenpeel, Scott, Schwientek, Patrick, Hugenholtz, Philip, Woyke, Tanja

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Diversity and genomic insights into the uncultured Chloroflexi from the human microbiota von Campbell, Alisha G, Schwientek, Patrick, Vishnivetskaya, Tatiana, Woyke, Tanja, Levy, Shawn, Beall, Clifford J, Griffen, Ann, Leys, Eugene, Podar, Mircea

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