Untargeted Metabolomics Strategies—Challenges and Emerging Directions von Schrimpe-Rutledge, Alexandra C., Codreanu, Simona G., Sherrod, Stacy D., McLean, John A.

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Probing morphological, genetic and metabolomic changes of in vitro embryo development in a microfluidic device von Mancini, Vanessa, McKeegan, Paul J., Schrimpe‐Rutledge, Alexandra C., Codreanu, Simona G., Sherrod, Stacy D., McLean, John A., Picton, Helen M., Pensabene, Virginia

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Model‐driven multi‐omic data analysis elucidates metabolic immunomodulators of macrophage activation von Bordbar, Aarash, Mo, Monica L, Nakayasu, Ernesto S, Schrimpe‐Rutledge, Alexandra C, Kim, Young‐Mo, Metz, Thomas O, Jones, Marcus B, Frank, Bryan C, Smith, Richard D, Peterson, Scott N, Hyduke, Daniel R, Adkins, Joshua N, Palsson, Bernhard O

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Serine Deamination Is a New Acid Tolerance Mechanism Observed in Uropathogenic Escherichia coli von Wiebe, Michelle A, Brannon, John R, Steiner, Bradley D, Bamidele, Adebisi, Schrimpe-Rutledge, Alexandra C, Codreanu, Simona G, Sherrod, Stacy D, McLean, John A, Hadjifrangiskou, Maria

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The genome organization of Thermotoga maritima reflects its lifestyle von Latif, Haythem, Lerman, Joshua A, Portnoy, Vasiliy A, Tarasova, Yekaterina, Nagarajan, Harish, Schrimpe-Rutledge, Alexandra C, Smith, Richard D, Adkins, Joshua N, Lee, Dae-Hee, Qiu, Yu, Zengler, Karsten

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Improving the discovery of secondary metabolite natural products using ion mobility–mass spectrometry von Schrimpe-Rutledge, Alexandra C, Sherrod, Stacy D, McLean, John A

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Temporal changes in glucose metabolism reflect polarization in resident and monocyte-derived macrophages after myocardial infarction von Mouton, Alan J, Aitken, Nikaela M, Moak, Sydney P, do Carmo, Jussara M, da Silva, Alexandre A, Omoto, Ana C M, Li, Xuan, Wang, Zhen, Schrimpe-Rutledge, Alexandra C, Codreanu, Simona G, Sherrod, Stacy D, McLean, John A, Hall, John E

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Discovery of Novel Glucose-Regulated Proteins in Isolated Human Pancreatic Islets Using LC–MS/MS-Based Proteomics von Schrimpe-Rutledge, Alexandra C, Fontès, Ghislaine, Gritsenko, Marina A, Norbeck, Angela D, Anderson, David J, Waters, Katrina M, Adkins, Joshua N, Smith, Richard D, Poitout, Vincent, Metz, Thomas O

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Metabolomic Analysis Evidences That Uterine Epithelial Cells Enhance Blastocyst Development in a Microfluidic Device von Mancini, Vanessa, Schrimpe-Rutledge, Alexandra C, Codreanu, Simona G, Sherrod, Stacy D, McLean, John A, Picton, Helen M, Pensabene, Virginia

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Comparative omics-driven genome annotation refinement: application across Yersiniae von Schrimpe-Rutledge, Alexandra C, Jones, Marcus B, Chauhan, Sadhana, Purvine, Samuel O, Sanford, James A, Monroe, Matthew E, Brewer, Heather M, Payne, Samuel H, Ansong, Charles, Frank, Bryan C, Smith, Richard D, Peterson, Scott N, Motin, Vladimir L, Adkins, Joshua N

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Differential gene expression mediated by 15-hydroxyeicosatetraenoic acid in LPS-stimulated RAW 264.7 cells von Schrimpe, Alexandra C, Wright, David W

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Data highlighting phenotypic diversity of urine-associated Escherichia coli isolates von Eberly, Allison R., Beebout, Connor J., Tong, Ching Man Carmen, Van Horn, Gerald T., Green, Hamilton D., Fitzgerald, Madison J., De, Shuvro, Apple, Emily K., Schrimpe-Rutledge, Alexandra C., Codreanu, Simona G., Sherrod, Stacy D., McLean, John A., Clayton, Douglass B., Stratton, Charles W., Schmitz, Jonathan E., Hadjifrangiskou, Maria

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VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data von Peterson, Elena S, McCue, Lee Ann, Schrimpe-Rutledge, Alexandra C, Jensen, Jeffrey L, Walker, Hyunjoo, Kobold, Markus A, Webb, Samantha R, Payne, Samuel H, Ansong, Charles, Adkins, Joshua N, Cannon, William R, Webb-Robertson, Bobbie-Jo M

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In silico method for modelling metabolism and gene product expression at genome scale von Lerman, Joshua A., Hyduke, Daniel R., Latif, Haythem, Portnoy, Vasiliy A., Lewis, Nathan E., Orth, Jeffrey D., Schrimpe-Rutledge, Alexandra C., Smith, Richard D., Adkins, Joshua N., Zengler, Karsten, Palsson, Bernhard O.

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A multi-omic systems approach to elucidating Yersinia virulence mechanisms von Ansong, Charles, Schrimpe-Rutledge, Alexandra C, Mitchell, Hugh D, Chauhan, Sadhana, Jones, Marcus B, Kim, Young-Mo, McAteer, Kathleen, Deatherage Kaiser, Brooke L, Dubois, Jennifer L, Brewer, Heather M, Frank, Bryan C, McDermott, Jason E, Metz, Thomas O, Peterson, Scott N, Smith, Richard D, Motin, Vladimir L, Adkins, Joshua N

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Lipid kinase PIK3C3 maintains healthy brown and white adipose tissues to prevent metabolic diseases von Song, Wenqiang, Postoak, J Luke, Yang, Guan, Guo, Xingyi, Pua, Heather H, Bader, Jackie, Rathmell, Jeffrey C, Kobayashi, Hanako, Haase, Volker H, Leaptrot, Katrina L, Schrimpe-Rutledge, Alexandra C, Sherrod, Stacy D, McLean, John A, Zhang, Jianhua, Wu, Lan, Van Kaer, Luc

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Impact of 4-hydroxynonenal on matrix metalloproteinase-9 regulation in lipopolysaccharide-stimulated RAW 264.7 cells von Schrimpe-Rutledge, Alexandra C., Fong, Kim Y., Wright, David W.

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Taurine modulates host cell responses to Helicobacter pylori VacA toxin von Westland, Mandy D, Schrimpe-Rutledge, Alexandra C, Codreanu, Simona G, Sherrod, Stacy D, McLean, John A, McClain, Mark S, Cover, Timothy L

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Utilizing Untargeted Ion Mobility-Mass Spectrometry To Profile Changes in the Gut Metabolome Following Biliary Diversion Surgery von Poland, James C, Schrimpe-Rutledge, Alexandra C, Sherrod, Stacy D, Flynn, Charles Robb, McLean, John A

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Comparative Analysis of Gene Expression Changes Mediated by Individual Constituents of Hemozoin von Schrimpe, Alexandra C, Wright, David W

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