Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer von Gendoo, Deena M A, Ratanasirigulchai, Natchar, Schröder, Markus S, Paré, Laia, Parker, Joel S, Prat, Aleix, Haibe-Kains, Benjamin

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survcomp: an R/Bioconductor package for performance assessment and comparison of survival models von Schröder, Markus S., Culhane, Aedín C., Quackenbush, John, Haibe-Kains, Benjamin

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PnB Designer: a web application to design prime and base editor guide RNAs for animals and plants von Siegner, Sebastian M, Karasu, Mehmet E, Schröder, Markus S, Kontarakis, Zacharias, Corn, Jacob E

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Genus-Wide Comparative Genomics of Malassezia Delineates Its Phylogeny, Physiology, and Niche Adaptation on Human Skin von Wu, Guangxi, Zhao, He, Li, Chenhao, Rajapakse, Menaka Priyadarsani, Wong, Wing Cheong, Xu, Jun, Saunders, Charles W, Reeder, Nancy L, Reilman, Raymond A, Scheynius, Annika, Sun, Sheng, Billmyre, Blake Robert, Li, Wenjun, Averette, Anna Floyd, Mieczkowski, Piotr, Heitman, Joseph, Theelen, Bart, Schröder, Markus S, De Sessions, Paola Florez, Butler, Geraldine, Maurer-Stroh, Sebastian, Boekhout, Teun, Nagarajan, Niranjan, Dawson, Jr, Thomas L

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Multiple Origins of the Pathogenic Yeast Candida orthopsilosis by Separate Hybridizations between Two Parental Species von Schröder, Markus S, Martinez de San Vicente, Kontxi, Prandini, Tâmara H R, Hammel, Stephen, Higgins, Desmond G, Bagagli, Eduardo, Wolfe, Kenneth H, Butler, Geraldine

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Comparative phenotypic analysis of the major fungal pathogens Candida parapsilosis and Candida albicans von Holland, Linda M, Schröder, Markus S, Turner, Siobhán A, Taff, Heather, Andes, David, Grózer, Zsuzsanna, Gácser, Attila, Ames, Lauren, Haynes, Ken, Higgins, Desmond G, Butler, Geraldine

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Comparative Genome Analysis and Gene Finding in Candida Species Using CGOB von Maguire, Sarah L., ÓhÉigeartaigh, Seán S., Byrne, Kevin P., Schröder, Markus S., O’Gaora, Peadar, Wolfe, Kenneth H., Butler, Geraldine

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Bassoon Specifically Controls Presynaptic P/Q-type Ca2+ Channels via RIM-Binding Protein von Davydova, Daria, Marini, Claudia, King, Claire, Klueva, Julia, Bischof, Ferdinand, Romorini, Stefano, Montenegro-Venegas, Carolina, Heine, Martin, Schneider, Romy, Schröder, Markus S., Altrock, Wilko D., Henneberger, Christian, Rusakov, Dmitri A., Gundelfinger, Eckart D., Fejtova, Anna

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CCAR1 promotes DNA repair via alternative splicing von Karasu, Mehmet E., Jahnke, Leonard, Joseph, Brian J., Amerzhanova, Yerkezhan, Mironov, Aleksei, Shu, Xuan, Schröder, Markus S., Gvozdenovic, Ana, Sala, Irene, Zavolan, Mihaela, Jonas, Stefanie, Corn, Jacob E.

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Recursive Editing improves homology-directed repair through retargeting of undesired outcomes von Möller, Lukas, Aird, Eric J., Schröder, Markus S., Kobel, Lena, Kissling, Lucas, van de Venn, Lilly, Corn, Jacob E.

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Epitope-engineered human hematopoietic stem cells are shielded from CD123-targeted immunotherapy von Marone, Romina, Landmann, Emmanuelle, Devaux, Anna, Lepore, Rosalba, Seyres, Denis, Zuin, Jessica, Burgold, Thomas, Engdahl, Corinne, Capoferri, Giuseppina, Dell'Aglio, Alessandro, Larrue, Clément, Simonetta, Federico, Rositzka, Julia, Rhiel, Manuel, Andrieux, Geoffroy, Gallagher, Danielle N, Schröder, Markus S, Wiederkehr, Amélie, Sinopoli, Alessandro, Do Sacramento, Valentin, Haydn, Anna, Garcia-Prat, Laura, Divsalar, Christopher, Camus, Anna, Xu, Liwen, Bordoli, Lorenza, Schwede, Torsten, Porteus, Matthew, Tamburini, Jérôme, Corn, Jacob E, Cathomen, Toni, Cornu, Tatjana I, Urlinger, Stefanie, Jeker, Lukas T

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Effect of progesterone on Candida albicans biofilm formation under acidic conditions: A transcriptomic analysis von Gonçalves, Bruna, Bernardo, Ruben, Wang, Can, Schröder, Markus S., Pedro, Nuno A., Butler, Geraldine, Azeredo, Joana, Henriques, Mariana, Pereira Mira, Nuno, Silva, Sónia

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Identification of Non-Coding RNAs in the Candida parapsilosis Species Group von Donovan, Paul D, Schröder, Markus S, Higgins, Desmond G, Butler, Geraldine

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ATF4 Regulates MYB to Increase γ-Globin in Response to Loss of β-Globin von Boontanrart, Mandy Y., Schröder, Markus S., Stehli, Gautier M., Banović, Marija, Wyman, Stacia K., Lew, Rachel J., Bordi, Matteo, Gowen, Benjamin G., DeWitt, Mark A., Corn, Jacob E.

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Skin Barrier Enhancing Alternative Preservation Strategy of O/W Emulsions by Water Activity Reduction with Natural Multifunctional Ingredients von Nadarzynski, Alexandra, Scholz, Jonas, Schröder, Markus S.

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Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis von Zhu, Yafeng, Engström, Pär G, Tellgren-Roth, Christian, Baudo, Charles D, Kennell, John C, Sun, Sheng, Billmyre, R Blake, Schröder, Markus S, Andersson, Anna, Holm, Tina, Sigurgeirsson, Benjamin, Wu, Guangxi, Sankaranarayanan, Sundar Ram, Siddharthan, Rahul, Sanyal, Kaustuv, Lundeberg, Joakim, Nystedt, Björn, Boekhout, Teun, Dawson, Jr, Thomas L, Heitman, Joseph, Scheynius, Annika, Lehtiö, Janne

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Correlating Genotype and Phenotype in the Asexual Yeast Candida orthopsilosis Implicates ZCF29 in Sensitivity to Caffeine von de San Vicente, Kontxi Martinez, Schröder, Markus S, Lombardi, Lisa, Iracane, Elise, Butler, Geraldine

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The CgHaa1-Regulon Mediates Response and Tolerance to Acetic Acid Stress in the Human Pathogen Candida glabrata von Bernardo, Ruben T, Cunha, Diana V, Wang, Can, Pereira, Leonel, Silva, Sónia, Salazar, Sara B, Schröder, Markus S, Okamoto, Michiyo, Takahashi-Nakaguchi, Azusa, Chibana, Hiroji, Aoyama, Toshihiro, Sá-Correia, Isabel, Azeredo, Joana, Butler, Geraldine, Mira, Nuno Pereira

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GeneSigDB: a manually curated database and resource for analysis of gene expression signatures von Culhane, Aedín C., Schröder, Markus S., Sultana, Razvan, Picard, Shaita C., Martinelli, Enzo N., Kelly, Caroline, Haibe-Kains, Benjamin, Kapushesky, Misha, St Pierre, Anne-Alyssa, Flahive, William, Picard, Kermshlise C., Gusenleitner, Daniel, Papenhausen, Gerald, O'Connor, Niall, Correll, Mick, Quackenbush, John

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Regulation of presynaptic anchoring of the scaffold protein Bassoon by phosphorylation-dependent interaction with 14-3-3 adaptor proteins von Schröder, Markus S, Stellmacher, Anne, Romorini, Stefano, Marini, Claudia, Montenegro-Venegas, Carolina, Altrock, Wilko D, Gundelfinger, Eckart D, Fejtova, Anna

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