Glycoproteomics-based signatures for tumor subtyping and clinical outcome prediction of high-grade serous ovarian cancer von Pan, Jianbo, Hu, Yingwei, Sun, Shisheng, Chen, Lijun, Schnaubelt, Michael, Clark, David, Ao, Minghui, Zhang, Zhen, Chan, Daniel, Qian, Jiang, Zhang, Hui

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Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography–mass spectrometry von Mertins, Philipp, Tang, Lauren C., Krug, Karsten, Clark, David J., Gritsenko, Marina A., Chen, Lijun, Clauser, Karl R., Clauss, Therese R., Shah, Punit, Gillette, Michael A., Petyuk, Vladislav A., Thomas, Stefani N., Mani, D. R., Mundt, Filip, Moore, Ronald J., Hu, Yingwei, Zhao, Rui, Schnaubelt, Michael, Keshishian, Hasmik, Monroe, Matthew E., Zhang, Zhen, Udeshi, Namrata D., Mani, Deepak, Davies, Sherri R., Townsend, R. Reid, Chan, Daniel W., Smith, Richard D., Zhang, Hui, Liu, Tao, Carr, Steven A.

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Impact of Increased FUT8 Expression on the Extracellular Vesicle Proteome in Prostate Cancer Cells von Clark, David J, Schnaubelt, Michael, Hoti, Naseruddin, Hu, Yingwei, Zhou, Yangying, Gooya, Mahta, Zhang, Hui

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Characterization of core fucosylation via sequential enzymatic treatments of intact glycopeptides and mass spectrometry analysis von Cao, Liwei, Lih, T. Mamie, Hu, Yingwei, Schnaubelt, Michael, Chen, Shao-Yung, Zhou, Yangying, Guo, Chuanyu, Dong, Mingming, Yang, Weiming, Eguez, Rodrigo Vargas, Chen, Lijun, Clark, David J., Sodhi, Akrit, Li, Qing Kay, Zhang, Hui

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Integrated glycoproteomic characterization of clear cell renal cell carcinoma von Lih, T. Mamie, Cho, Kyung-Cho, Schnaubelt, Michael, Hu, Yingwei, Zhang, Hui

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Comparison of Near-Surface Air Temperatures and MODIS Ice-Surface Temperatures at Summit, Greenland (2008–13) von Shuman, Christopher A., Hall, Dorothy K., DiGirolamo, Nicolo E., Mefford, Thomas K., Schnaubelt, Michael J.

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Orthogonal Proteomic Platforms and Their Implications for the Stable Classification of High-Grade Serous Ovarian Cancer Subtypes von Thomas, Stefani N., Friedrich, Betty, Schnaubelt, Michael, Chan, Daniel W., Zhang, Hui, Aebersold, Ruedi

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Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability von McDermott, Jason E., Arshad, Osama A., Petyuk, Vladislav A., Fu, Yi, Gritsenko, Marina A., Clauss, Therese R., Moore, Ronald J., Schepmoes, Athena A., Zhao, Rui, Monroe, Matthew E., Schnaubelt, Michael, Tsai, Chia-Feng, Payne, Samuel H., Huang, Chen, Wang, Liang-Bo, Foltz, Steven, Wyczalkowski, Matthew, Wu, Yige, Song, Ehwang, Brewer, Molly A., Thiagarajan, Mathangi, Kinsinger, Christopher R., Robles, Ana I., Boja, Emily S., Rodriguez, Henry, Chan, Daniel W., Zhang, Bing, Zhang, Zhen, Ding, Li, Smith, Richard D., Liu, Tao, Rodland, Karin D.

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Quality Assessments of Long-Term Quantitative Proteomic Analysis of Breast Cancer Xenograft Tissues von Zhou, Jian-Ying, Chen, Lijun, Zhang, Bai, Tian, Yuan, Liu, Tao, Thomas, Stefani N, Chen, Li, Schnaubelt, Michael, Boja, Emily, Hiltke, Tara, Kinsinger, Christopher R, Rodriguez, Henry, Davies, Sherri R, Li, Shunqiang, Snider, Jacqueline E, Erdmann-Gilmore, Petra, Tabb, David L, Townsend, R. Reid, Ellis, Matthew J, Rodland, Karin D, Smith, Richard D, Carr, Steven A, Zhang, Zhen, Chan, Daniel W, Zhang, Hui

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4058 Enhanced efficiency of large-scale clinical proteomic studies: when less is more von Thomas, Stefani, Friedrich, Betty, Schnaubelt, Michael, Chan, Daniel W., Zhang, Hui, Aebersold, Ruedi

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Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma von Satpathy, Shankha, Cao, Song, Dhanasekaran, Saravana M., Vasaikar, Suhas V., Petralia, Francesca, Liang, Wen-Wei, Krek, Azra, Hong, Runyu, Blumenberg, Lili, Wendl, Michael C., Wen, Bo, Tang, Lauren C., MacMullan, Melanie A., Kane, M. Harry, Newton, Chelsea J., Cornwell, MacIntosh, Yoo, Seungyeul, Mannan, Rahul, Vats, Pankaj, Kumar-Sinha, Chandan, Colaprico, Antonio, Geffen, Yifat, Wiznerowicz, Maciej, Gümüş, Zeynep H., Veluswamy, Rajwanth R., Hostetter, Galen, Mesri, Mehdi, Boja, Emily S., Omenn, Gilbert S., Thiagarajan, Mathangi, Getz, Gad, Cieslik, Marcin P., Govindan, Ramaswamy, Wang, Pei, Nesvizhskii, Alexey I., Ding, Li, Mani, D.R., Francis, Alicia, Charamut, Alyssa, Paulovich, Amanda G., Karnuta, Andrii, Hindenach, Barbara, Druker, Brian J., Birger, Chet, Jones, Corbin D., Rohrer, Daniel C., Zhou, Daniel Cui, Chan, Daniel W., Chesla, David, Clark, David J., Tan, Donghui, Duffy, Elizabeth, Bergstrom, Erik J., Wilson, George D., Chen, Hai-Quan, Sun, Hua, Whiteaker, Jeffrey R., Rodland, Karin D., Hoadley, Katherine A., Elburn, Kim, Hannick, Linda, Qi, Liqun, Sokoll, Lori J., Wojtyś, Małgorzata, Domagalski, Marcin J., Beasley, Mary B., Monroe, Matthew E., Ellis, Matthew J., Dyer, Maureen, Burke, Meghan C., Borucki, Melissa, Schnaubelt, Michael, Chaikin, Michelle, Selvan, Myvizhi Esai, McGarvey, Peter B., Thangudu, Ratna R., Smith, Richard D., Welsh, Robert J., Zelt, Robert, Mehra, Rohit, Matteotti, Ronald, Mareedu, Sailaja, Payne, Samuel H., Cottingham, Sandra, Chugh, Seema, Smith, Shaleigh, Tsang, Shirley, Cai, Shuang, Boca, Simina M., Stein, Stephen E., Krubit, Tanya, Skelly, Tara, Bauer, Thomas, Velvulou, Uma, Petyuk, Vladislav A., Bocik, William E., Maggio, William W., Chen, Xi, Wu, Yige, Shi, Zhiao

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MS-PyCloud: A Cloud Computing-Based Pipeline for Proteomic and Glycoproteomic Data Analyses von Hu, Yingwei, Schnaubelt, Michael, Chen, Li, Zhang, Bai, Hoang, Trung, Lih, T. Mamie, Zhang, Zhen, Zhang, Hui

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Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability von McDermott, Jason E., Arshad, Osama A., Petyuk, Vladislav A., Fu, Yi, Gritsenko, Marina A., Clauss, Therese R., Moore, Ronald J., Schepmoes, Athena A., Zhao, Rui, Monroe, Matthew E., Schnaubelt, Michael, Tsai, Chia-Feng, Payne, Samuel H., Huang, Chen, Wang, Liang-Bo, Foltz, Steven, Wyczalkowski, Matthew, Wu, Yige, Song, Ehwang, Brewer, Molly A., Thiagarajan, Mathangi, Kinsinger, Christopher R., Robles, Ana I., Boja, Emily S., Rodriguez, Henry, Chan, Daniel W., Zhang, Bing, Zhang, Zhen, Ding, Li, Smith, Richard D., Liu, Tao, Rodland, Karin D.

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Comparing local energy cascade rates in isotropic turbulence using structure-function and filtering formulations von Yao, Hanxun, Schnaubelt, Michael, Szalay, Alexander S., Zaki, Tamer A., Meneveau, Charles

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Developing Workflow for Simultaneous Analyses of Phosphopeptides and Glycopeptides von Cho, Kyung-Cho, Chen, Lijun, Hu, Yingwei, Schnaubelt, Michael, Zhang, Hui

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Histopathologic and proteogenomic heterogeneity reveals features of clear cell renal cell carcinoma aggressiveness von Lih, Tung-Shing M., Mannan, Rahul, Cieslik, Marcin, Wu, Yige, Lu, Rita Jiu-Hsien, Clark, David J., Kołodziejczak, Iga, Hong, Runyu, Caravan, Wagma, Naser Al Deen, Nataly, Hosseini, Noshad, Krug, Karsten, Xu, Yuanwei, Wendl, Michael C., Zhang, Cissy, Cho, Hanbyul, Leprevost, Felipe da Veiga, Teo, Guo Ci, Reimers, Melissa A., Lazar, Alexander J., Chinnaiyan, Arul M., Van Tine, Brian A., Rodland, Karin D., Getz, Gad, Mani, D.R., Hostetter, Galen, Linehan, W. Marston, Jewell, Scott D., Omenn, Gilbert S., Wiznerowicz, Maciej, Robles, Ana I., Hiltke, Tara, An, Eunkyung, Rodriguez, Henry, Chan, Daniel W., Nesvizhskii, Alexey I., Zhang, Hui, Francis, Alicia, Paulovich, Amanda G., Antczak, Andrzej, Green, Anthony, Colaprico, Antonio, Pruetz, Barb, Yadav, Birendra Kumar, Reva, Boris, Fevrier-Sullivan, Brenda, Druker, Brian J., Goldthwaite, Charles A., Rohrer, Daniel C., Tansil, Darlene, Chesla, David, Duffy, Elizabeth, Schadt, Eri E., Bromiński, Gabriel, Wilson, George D., Hsieh, James, Lubiński, Jan, Bavarva, Jasmin, Huang, Jasmine, Hafron, Jason, Eschbacher, Jennifer, Hon, Jennifer, Francis, Jesse, Freymann, John, Wang, Joshua, Kirby, Justin, Zaalishvili, Kakhaber, Ketchum, Karen A., Um, Ki Sung, Domagalski, Marcin J., Tobin, Matt, Dyer, Maureen, Anurag, Meenakshi, Ittmann, Michael M., Roehrl, Michael H., Smith, Michael, Roche, Nancy, Maunganidze, Nicollette, Potapova, Olga, Castro, Patricia, Kurzawa, Paweł, Hariharan, Pushpa, Li, Qin, Montgomery, Rebecca, Smith, Richard D., Mareedu, Sailaja, Cerda, Sandra, Haynes, Sarah, Satpathy, Shankha, Richey, Shannon, Tsang, Shirley X., Cai, Shuang, Cao, Song, Gabriel, Stacey, Carr, Steven A., Liu, Tao, Bauer, Thomas, Le, Toan, Chen, Xi S., Zhang, Zhen

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Spatially restricted drivers and transitional cell populations cooperate with the microenvironment in untreated and chemo-resistant pancreatic cancer von Cui Zhou, Daniel, Jayasinghe, Reyka G., Chen, Siqi, Herndon, John M., Iglesia, Michael D., Navale, Pooja, Wendl, Michael C., Caravan, Wagma, Sato, Kazuhito, Storrs, Erik, Mo, Chia-Kuei, Liu, Jingxian, Southard-Smith, Austin N., Wu, Yige, Naser Al Deen, Nataly, Baer, John M., Fulton, Robert S., Wyczalkowski, Matthew A., Liu, Ruiyang, Fronick, Catrina C., Fulton, Lucinda A., Shinkle, Andrew, Thammavong, Lisa, Zhu, Houxiang, Sun, Hua, Wang, Liang-Bo, Li, Yize, Zuo, Chong, McMichael, Joshua F., Davies, Sherri R., Appelbaum, Elizabeth L., Robbins, Keenan J., Chasnoff, Sara E., Yang, Xiaolu, Reeb, Ashley N., Oh, Clara, Serasanambati, Mamatha, Lal, Preet, Varghese, Rajees, Mashl, Jay R., Ponce, Jennifer, Terekhanova, Nadezhda V., Yao, Lijun, Wang, Fang, Chen, Lijun, Schnaubelt, Michael, Lu, Rita Jui-Hsien, Schwarz, Julie K., Puram, Sidharth V., Kim, Albert H., Song, Sheng-Kwei, Shoghi, Kooresh I., Lau, Ken S., Ju, Tao, Chen, Ken, Chatterjee, Deyali, Hawkins, William G., Zhang, Hui, Achilefu, Samuel, Chheda, Milan G., Oh, Stephen T., Gillanders, William E., Chen, Feng, DeNardo, David G., Fields, Ryan C., Ding, Li

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Glycans, Glycosite, and Intact Glycopeptide Analysis of N‑Linked Glycoproteins Using Liquid Handling Systems von Chen, Shao-Yung, Dong, Mingming, Yang, Ganglong, Zhou, Yangying, Clark, David J, Lih, T. Mamie, Schnaubelt, Michael, Liu, Zichen, Zhang, Hui

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OmicsOne: associate omics data with phenotypes in one-click von Zhang, Hui, Ao, Minghui, Boja, Arianna, Schnaubelt, Michael, Hu, Yingwei

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Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation von Geffen, Yifat, Anand, Shankara, Akiyama, Yo, Yaron, Tomer M., Song, Yizhe, Johnson, Jared L., Govindan, Akshay, Li, Yize, Huntsman, Emily, Wang, Liang-Bo, Birger, Chet, Heiman, David I., Zhang, Qing, Miller, Mendy, Calinawan, Anna, Belkin, Saveliy, Kerelsky, Alexander, Clauser, Karl R., Krug, Karsten, Satpathy, Shankha, Payne, Samuel H., Mani, D.R., Gillette, Michael A., Dhanasekaran, Saravana M., Thiagarajan, Mathangi, Mesri, Mehdi, Rodriguez, Henry, Robles, Ana I., Lazar, Alexander J., Ding, Li, Getz, Gad, An, Eunkyung, Anurag, Meenakshi, Bavarva, Jasmin, Birrer, Michael J., Cao, Song, Ceccarelli, Michele, Chinnaiyan, Arul M., Chowdhury, Shrabanti, Colaprico, Antonio, Carr, Steven A., da Veiga Leprevost, Felipe, Day, Corbin, Domagalski, Marcin J., Ellis, Matthew J., Fenyo, David, Foltz, Steven M., Francis, Alicia, Gonzalez Robles, Tania J., Gosline, Sara J.C., Gümüş, Zeynep H., Hiltke, Tara, Hong, Runyu, Hu, Yingwei, Huang, Chen, Iavarone, Antonio, Jewel, Scott D., Katsnelson, Lizabeth, Ketchum, Karen A., Kolodziejczak, Iga, Kumar-Sinha, Chandan, Krug, Karsten, Lei, Jonathan T., Liang, Wen-Wei, Liao, Yuxing, Lindgren, Caleb M., Liu, Tao, Liu, Wenke, Ma, Weiping, McKerrow, Wilson, Mesri, Mehdi, Newton, Chelsea, Omenn, Gilbert S., Paulovich, Amanda G., Petralia, Francesca, Pugliese, Pietro, Reva, Boris, Rodland, Karin D., Ruggles, Kelly V., Rodrigues, Fernanda Martins, Savage, Sara R., Schadt, Eric E., Schnaubelt, Michael, Schraink, Tobias, Shi, Zhiao, Smith, Richard D., Stathias, Vasileios, Storrs, Erik P., Selvan, Myvizhi Esai, Tan, Jimin, Thangudu, Ratna R., Wang, Joshua M., Wang, Pei, Wang, Ying (Cindy), Wen, Bo, Wu, Yige, Yi, Xinpei, Zhang, Bing, Zhang, Xu, Zhang, Zhen

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