Spatial reconstruction of single-cell gene expression data von Satija, Rahul, Farrell, Jeffrey A, Gennert, David, Schier, Alexander F, Regev, Aviv

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Efficient mutagenesis by Cas9 protein-mediated oligonucleotide insertion and large-scale assessment of single-guide RNAs von Gagnon, James A, Valen, Eivind, Thyme, Summer B, Huang, Peng, Akhmetova, Laila, Ahkmetova, Laila, Pauli, Andrea, Montague, Tessa G, Zimmerman, Steven, Richter, Constance, Schier, Alexander F

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Maternal-Zygotic Transition: Death and Birth of RNAs von Schier, Alexander F

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Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis von Farrell, Jeffrey A, Wang, Yiqun, Riesenfeld, Samantha J, Shekhar, Karthik, Regev, Aviv, Schier, Alexander F

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Morphogen Gradients: From Generation to Interpretation von Rogers, Katherine W, Schier, Alexander F

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Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain von Raj, Bushra, Wagner, Daniel E, McKenna, Aaron, Pandey, Shristi, Klein, Allon M, Shendure, Jay, Gagnon, James A, Schier, Alexander F

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Comprehensive Identification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA-Seq von Pandey, Shristi, Shekhar, Karthik, Regev, Aviv, Schier, Alexander F.

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Whole-organism lineage tracing by combinatorial and cumulative genome editing von McKenna, Aaron, Findlay, Gregory M., Gagnon, James A., Horwitz, Marshall S., Schier, Alexander F., Shendure, Jay

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Non-coding RNAs as regulators of embryogenesis von Pauli, Andrea, Schier, Alexander F, Rinn, John L

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Conservation of uORF repressiveness and sequence features in mouse, human and zebrafish von Chew, Guo-Liang, Pauli, Andrea, Schier, Alexander F.

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High-Resolution Sequencing and Modeling Identifies Distinct Dynamic RNA Regulatory Strategies von Rabani, Michal, Raychowdhury, Raktima, Jovanovic, Marko, Rooney, Michael, Stumpo, Deborah J., Pauli, Andrea, Hacohen, Nir, Schier, Alexander F., Blackshear, Perry J., Friedman, Nir, Amit, Ido, Regev, Aviv

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Dampened Hedgehog signaling but normal Wnt signaling in zebrafish without cilia von Huang, Peng, Schier, Alexander F

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Whole-brain activity mapping onto a zebrafish brain atlas von Randlett, Owen, Wee, Caroline L, Naumann, Eva A, Nnaemeka, Onyeka, Schoppik, David, Fitzgerald, James E, Portugues, Ruben, Lacoste, Alix M B, Riegler, Clemens, Engert, Florian, Schier, Alexander F

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Identifying (non‐)coding RNAs and small peptides: Challenges and opportunities von Pauli, Andrea, Valen, Eivind, Schier, Alexander F

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Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs von Chew, Guo-Liang, Pauli, Andrea, Rinn, John L, Regev, Aviv, Schier, Alexander F, Valen, Eivind

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Morphogen transport von Müller, Patrick, Rogers, Katherine W, Yu, Shuizi R, Brand, Michael, Schier, Alexander F

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Extracellular Movement of Signaling Molecules von Müller, Patrick, Schier, Alexander F.

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Behavioral screening for neuroactive drugs in zebrafish von Rihel, Jason, Schier, Alexander F.

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Internal guide RNA interactions interfere with Cas9-mediated cleavage von Thyme, Summer B., Akhmetova, Laila, Montague, Tessa G., Valen, Eivind, Schier, Alexander F.

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Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis von Pauli, Andrea, Valen, Eivind, Lin, Michael F, Garber, Manuel, Vastenhouw, Nadine L, Levin, Joshua Z, Fan, Lin, Sandelin, Albin, Rinn, John L, Regev, Aviv, Schier, Alexander F

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