Numerical Approach to Spatial Deterministic-Stochastic Models Arising in Cell Biology von Schaff, James C, Gao, Fei, Li, Ye, Novak, Igor L, Slepchenko, Boris M

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The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2 von Hucka, Michael, Bergmann, Frank T, Chaouiya, Claudine, Dräger, Andreas, Hoops, Stefan, Keating, Sarah M, König, Matthias, Novère, Nicolas Le, Myers, Chris J, Olivier, Brett G, Sahle, Sven, Schaff, James C, Sheriff, Rahuman, Smith, Lucian P, Waltemath, Dagmar, Wilkinson, Darren J, Zhang, Fengkai

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Virtual cell modeling and simulation software von Blinov, Michael L., Moraru, Ion I., Schaff, James C., Loew, Leslie M.

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Cell Shape and Negative Links in Regulatory Motifs Together Control Spatial Information Flow in Signaling Networks von Neves, Susana R., Tsokas, Panayiotis, Sarkar, Anamika, Grace, Elizabeth A., Rangamani, Padmini, Taubenfeld, Stephen M., Alberini, Cristina M., Schaff, James C., Blitzer, Robert D., Moraru, Ion I., Iyengar, Ravi

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Compartmental and Spatial Rule-Based Modeling with Virtual Cell von Blinov, Michael L., Schaff, James C., Vasilescu, Dan, Moraru, Ion I., Bloom, Judy E., Loew, Leslie M.

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The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core von Hucka, Michael, Bergmann, Frank T., Dräger, Andreas, Hoops, Stefan, Keating, Sarah M., Le Novère, Nicolas, Myers, Chris J., Olivier, Brett G., Sahle, Sven, Schaff, James C., Smith, Lucian P., Waltemath, Dagmar, Wilkinson, Darren J.

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Rule-based modeling with Virtual Cell von Schaff, James C, Vasilescu, Dan, Moraru, Ion I, Loew, Leslie M, Blinov, Michael L

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The Virtual Cell: a software environment for computational cell biology von Loew, Leslie M., Schaff, James C.

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SBML level 3 package: spatial processes, version 1, release 1 von Schaff, James C., Lakshminarayana, Anuradha, Murphy, Robert F., Bergmann, Frank T., Funahashi, Akira, Sullivan, Devin P., Smith, Lucian P.

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Quantitative cell biology with the Virtual Cell von Slepchenko, Boris M., Schaff, James C., Macara, Ian, Loew, Leslie M.

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Virtual Cell: computational tools for modeling in cell biology von Resasco, Diana C., Gao, Fei, Morgan, Frank, Novak, Igor L., Schaff, James C., Slepchenko, Boris M.

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Diffusion on a curved surface coupled to diffusion in the volume: Application to cell biology von Novak, Igor L., Gao, Fei, Choi, Yung-Sze, Resasco, Diana, Schaff, James C., Slepchenko, Boris M.

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The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core von Hucka, Michael, Bergmann, Frank T., Hoops, Stefan, Keating, Sarah M., Sahle, Sven, Schaff, James C., Smith, Lucian P., Wilkinson, Darren J.

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A systems pharmacology model for gene therapy in sickle cell disease von Zheng, Bo, Wille, Lucia, Peppel, Karsten, Hagen, David, Matteson, Andrew, Ahlers, Jeffrey, Schaff, James, Hua, Fei, Yuraszeck, Theresa, Cobbina, Enoch, Apgar, Joshua F., Burke, John M., Roberts, John, Das, Raibatak

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Pathway Commons at virtual cell: use of pathway data for mathematical modeling von Blinov, Michael L, Schaff, James C, Ruebenacker, Oliver, Wei, Xintao, Vasilescu, Dan, Gao, Fei, Morgan, Frank, Ye, Li, Lakshminarayana, Anuradha, Moraru, Ion I, Loew, Leslie M

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Virtual NEURON: a strategy for merged biochemical and electrophysiological modeling von Brown, Sherry-Ann, Moraru, Ion I., Schaff, James C., Loew, Leslie M.

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Systems Analysis of Ran Transport von Smith, Alicia E., Slepchenko, Boris M., Schaff, James C., Loew, Leslie M., Macara, Ian G.

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Reaction-diffusion modeling in the NEURON simulator von McDougal, Robert A, Skolnick, Yosef, Schaff, James C, Lytton, William W, Hines, Michael L

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Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions von Hucka, Michael, Bergmann, Frank T., Dräger, Andreas, Hoops, Stefan, Keating, Sarah M., Le Novère, Nicolas, Myers, Chris J., Olivier, Brett G., Sahle, Sven, Schaff, James C., Smith, Lucian P., Waltemath, Dagmar, Wilkinson, Darren J.

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The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core von Hucka, Michael, Bergmann, Frank T., Dräger, Andreas, Hoops, Stefan, Keating, Sarah M., Le Novère, Nicolas, Myers, Chris J., Olivier, Brett G., Sahle, Sven, Schaff, James C., Smith, Lucian P., Waltemath, Dagmar, Wilkinson, Darren J.

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