CRISPR/Cas9-Mediated Genome Editing of Herpesviruses Limits Productive and Latent Infections von van Diemen, Ferdy R, Kruse, Elisabeth M, Hooykaas, Marjolein J G, Bruggeling, Carlijn E, Schürch, Anita C, van Ham, Petra M, Imhof, Saskia M, Nijhuis, Monique, Wiertz, Emmanuel J H J, Lebbink, Robert Jan

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Challenges and opportunities for whole‐genome sequencing–based surveillance of antibiotic resistance von Schürch, Anita C., Schaik, Willem

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Whole genome sequencing options for bacterial strain typing and epidemiologic analysis based on single nucleotide polymorphism versus gene-by-gene–based approaches von Schürch, A.C., Arredondo-Alonso, S., Willems, R.J.L., Goering, R.V.

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Regulation of hematopoietic and leukemic stem cells by the immune system von Riether, C, Schürch, C M, Ochsenbein, A F

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Plasmids Shaped the Recent Emergence of the Major Nosocomial Pathogen Enterococcus faecium von Arredondo-Alonso, S, Top, J, McNally, A, Puranen, S, Pesonen, M, Pensar, J, Marttinen, P, Braat, J C, Rogers, M R C, van Schaik, W, Kaski, S, Willems, R J L, Corander, J, Schürch, A C

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On the (im)possibility of reconstructing plasmids from whole-genome short-read sequencing data von Arredondo-Alonso, Sergio, Willems, Rob J, van Schaik, Willem, Schürch, Anita C

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Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era von Pöntinen, Anna K., Top, Janetta, Arredondo-Alonso, Sergio, Tonkin-Hill, Gerry, Freitas, Ana R., Novais, Carla, Gladstone, Rebecca A., Pesonen, Maiju, Meneses, Rodrigo, Pesonen, Henri, Lees, John A., Jamrozy, Dorota, Bentley, Stephen D., Lanza, Val F., Torres, Carmen, Peixe, Luisa, Coque, Teresa M., Parkhill, Julian, Schürch, Anita C., Willems, Rob J. L., Corander, Jukka

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Extended-spectrum beta-lactamase (ESBL)-producing and non-ESBL-producing Escherichia coli isolates causing bacteremia in the Netherlands (2014 - 2016) differ in clonal distribution... von van Hout, Denise, Verschuuren, Tess D, Bruijning-Verhagen, Patricia C J, Bosch, Thijs, Schürch, Anita C, Willems, Rob J L, Bonten, Marc J M, Kluytmans, Jan A J W

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mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species von Arredondo-Alonso, Sergio, Rogers, Malbert R C, Braat, Johanna C, Verschuuren, Tess D, Top, Janetta, Corander, Jukka, Willems, Rob J L, Schürch, Anita C

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New viruses in idiopathic human diarrhea cases, the Netherlands von Smits, Saskia L, Schapendonk, Claudia M E, van Beek, Janko, Vennema, Harry, Schürch, Anita C, Schipper, Debby, Bodewes, Rogier, Haagmans, Bart L, Osterhaus, Albert D M E, Koopmans, Marion P

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Mode and dynamics of vanA-type vancomycin resistance dissemination in Dutch hospitals von Arredondo-Alonso, Sergio, Top, Janetta, Corander, Jukka, Willems, Rob J L, Schürch, Anita C

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Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data von Bryant, Josephine M, Schürch, Anita C, van Deutekom, Henk, Harris, Simon R, de Beer, Jessica L, de Jager, Victor, Kremer, Kristin, van Hijum, Sacha A F T, Siezen, Roland J, Borgdorff, Martien, Bentley, Stephen D, Parkhill, Julian, van Soolingen, Dick

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Comparative analysis of Mycobacterium tuberculosis pe and ppe genes reveals high sequence variation and an apparent absence of selective constraints von McEvoy, Christopher R E, Cloete, Ruben, Müller, Borna, Schürch, Anita C, van Helden, Paul D, Gagneux, Sebastien, Warren, Robin M, Gey van Pittius, Nicolaas C

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Novel cyclovirus in human cerebrospinal fluid, Malawi, 2010-2011 von Smits, Saskia L, Zijlstra, Ed E, van Hellemond, Jaap J, Schapendonk, Claudia M E, Bodewes, Rogier, Schürch, Anita C, Haagmans, Bart L, Osterhaus, Albert D M E

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Inhibition of prostaglandin-degrading enzyme 15-PGDH rejuvenates aged muscle mass and strength von Palla, A R, Ravichandran, M, Wang, Y X, Alexandrova, L, Yang, A V, Kraft, P, Holbrook, C A, Schürch, C M, Ho, A T V, Blau, H M

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Exploring the potential of next-generation sequencing in detection of respiratory viruses von Prachayangprecha, Slinporn, Schapendonk, Claudia M E, Koopmans, Marion P, Osterhaus, Albert D M E, Schürch, Anita C, Pas, Suzan D, van der Eijk, Annemiek A, Poovorawan, Yong, Haagmans, Bart L, Smits, Saskia L

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Prevalence, risk factors and genetic characterisation of extended-spectrum beta-lactamase and carbapenemase-producing Enterobacteriaceae (ESBL-E and CPE): a community-based cross-s... von van den Bunt, Gerrita, van Pelt, Wilfrid, Hidalgo, Laura, Scharringa, Jelle, de Greeff, Sabine C., Schürch, Anita C., Mughini-Gras, Lapo, Bonten, Marc J.M., Fluit, Ad C.

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High-Resolution Typing by Integration of Genome Sequencing Data in a Large Tuberculosis Cluster von Schürch, Anita C, Kremer, Kristin, Daviena, Olaf, Kiers, Albert, Boeree, Martin J, Siezen, Roland J, van Soolingen, Dick

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Metagenomic assembly is the main bottleneck in the identification of mobile genetic elements von Kerkvliet, Jesse J, Bossers, Alex, Kers, Jannigje G, Meneses, Rodrigo, Willems, Rob, Schürch, Anita C

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gplas: a comprehensive tool for plasmid analysis using short-read graphs von Arredondo-Alonso, Sergio, Bootsma, Martin, Hein, Yaïr, Rogers, Malbert R C, Corander, Jukka, Willems, Rob J L, Schürch, Anita C

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