3D interaction homology: The hydropathic interaction environments of even alanine are diverse and provide novel structural insight von Ahmed, Mostafa H., Catalano, Claudio, Portillo, Samuel C., Safo, Martin K., Neel Scarsdale, J., Kellogg, Glen E.

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Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target-methylated DNA sequence von Scarsdale, J Neel, Webb, Heather D, Ginder, Gordon D, Williams, Jr, David C

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Nitrosative stress sensing in Porphyromonas gingivalis: structure of and heme binding by the transcriptional regulator HcpR von Belvin, B. Ross, Musayev, Faik N., Burgner, John, Scarsdale, J. Neel, Escalante, Carlos R., Lewis, Janina P.

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Probing the dynamic distribution of bound states for methylcytosine-binding domains on DNA von Cramer, Jason M, Scarsdale, J Neel, Walavalkar, Ninad M, Buchwald, William A, Ginder, Gordon D, Williams, Jr, David C

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Bound water at protein-protein interfaces: partners, roles and hydrophobic bubbles as a conserved motif von Ahmed, Mostafa H, Spyrakis, Francesca, Cozzini, Pietro, Tripathi, Parijat K, Mozzarelli, Andrea, Scarsdale, J Neel, Safo, Martin A, Kellogg, Glen E

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3d interaction homology: The structurally known rotamers of tyrosine derive from a surprisingly limited set of information-rich hydropathic interaction environments described by ma... von Ahmed, Mostafa H., Koparde, Vishal N., Safo, Martin K., Neel Scarsdale, J., Kellogg, Glen E.

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Applying an empirical hydropathic forcefield in refinement may improve low-resolution protein X-ray crystal structures von Koparde, Vishal N, Scarsdale, J Neel, Kellogg, Glen E

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Crystal Structure of a Substrate Complex of Mycobacterium tuberculosis β-Ketoacyl-acyl Carrier Protein Synthase III (FabH) with Lauroyl-coenzyme A von Musayev, Faik, Sachdeva, Sarbjot, Neel Scarsdale, J., Reynolds, K.A., Wright, H.T.

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Structure-Based Mechanism for Early PLP-Mediated Steps of Rabbit Cytosolic Serine Hydroxymethyltransferase Reaction von Schirch, Verne, Wright, H. Tonie, di Salvo, Martino Luigi, Scarsdale, J. Neel, Kazanina, Galina, Contestabile, Roberto

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Solution structure and intramolecular exchange of methyl-cytosine binding domain protein 4 (MBD4) on DNA suggests a mechanism to scan for mCpG/TpG mismatches von Walavalkar, Ninad M, Cramer, Jason M, Buchwald, William A, Scarsdale, J Neel, Williams, Jr, David C

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Binding of Adenosine-Based Ligands to the MjDim1 rRNA Methyltransferase: Implications for Reaction Mechanism and Drug Design von O’Farrell, Heather C, Musayev, Faik N, Scarsdale, J. Neel, Rife, Jason P

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3D Interaction Homology: Hydropathic Analyses of the “π–Cation” and “π–π” Interaction Motifs in Phenylalanine, Tyrosine, and Tryptophan Residues von AL Mughram, Mohammed H, Catalano, Claudio, Bowry, John P, Safo, Martin K, Scarsdale, J. Neel, Kellogg, Glen E

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An intrinsically disordered region of methyl-CpG binding domain protein 2 (MBD2) recruits the histone deacetylase core of the NuRD complex von Desai, Megha A, Webb, Heather D, Sinanan, Leander M, Scarsdale, J Neel, Walavalkar, Ninad M, Ginder, Gordon D, Williams, Jr, David C

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p66α—MBD2 coiled-coil interaction and recruitment of Mi-2 are critical for globin gene silencing by the MBD2—NuRD complex von Gnanapragasam, Merlin Nithya, Scarsdale, J. Neel, Amaya, Maria L., Webb, Heather D., Desai, Megha A., Walavalkar, Ninad M., Wang, Shou Zhen, Zu Zhu, Sheng, Ginder, Gordon D., Williams, David C., Felsenfeld, Gary

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Cooperative effects in long-range 1,4 DNA-DNA interstrand cross-links formed by polynuclear platinum complexes: an unexpected syn orientation of adenine bases outside the binding s... von Qu, Yun, Scarsdale, Neel J, Tran, My-Chau, Farrell, Nicholas P

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Hydropathic analysis of the free energy differences in anthracycline antibiotic binding to DNA von Cashman, Derek J., Scarsdale, J. Neel, Kellogg, Glen E.

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Hydropathic Analysis and Comparison of KcsA and Shaker Potassium Channels von Peng, Yong, Scarsdale, J. Neel, Kellogg, Glen E.

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Location of the Pteroylpolyglutamate-binding Site on Rabbit Cytosolic Serine Hydroxymethyltransferase von Fu, Tzu-Fun, Scarsdale, J Neel, Kazanina, Galina, Schirch, Verne, Wright, H Tonie

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Probing reactivity and substrate specificity of both subunits of the dimeric Mycobacterium tuberculosis FabH using alkyl-CoA disulfide inhibitors and acyl-CoA substrates von Sachdeva, Sarbjot, Musayev, Faik, Alhamadsheh, Mamoun M., Neel Scarsdale, J., Tonie Wright, H., Reynolds, Kevin A.

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Interaction of Thrombin with Sucrose Octasulfate von Desai, Bijoy J, Boothello, Rio S, Mehta, Akul Y, Scarsdale, J. Neel, Wright, H. Tonie, Desai, Umesh R

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