INPS-MD: a web server to predict stability of protein variants from sequence and structure von Savojardo, Castrense, Fariselli, Piero, Martelli, Pier Luigi, Casadio, Rita

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DeepSig: deep learning improves signal peptide detection in proteins von Savojardo, Castrense, Martelli, Pier Luigi, Fariselli, Piero, Casadio, Rita

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DeepMito: accurate prediction of protein sub-mitochondrial localization using convolutional neural networks von Savojardo, Castrense, Bruciaferri, Niccolò, Tartari, Giacomo, Martelli, Pier Luigi, Casadio, Rita

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Machine learning solutions for predicting protein–protein interactions von Casadio, Rita, Martelli, Pier Luigi, Savojardo, Castrense

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Testing the Capability of Embedding-Based Alignments on the GST Superfamily Classification: The Role of Protein Length von Vazzana, Gabriele, Savojardo, Castrense, Martelli, Pier Luigi, Casadio, Rita

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DOME: recommendations for supervised machine learning validation in biology von Walsh, Ian, Fishman, Dmytro, Garcia-Gasulla, Dario, Titma, Tiina, Pollastri, Gianluca, Harrow, Jennifer, Psomopoulos, Fotis E., Tosatto, Silvio C. E.

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Solvent Accessibility of Residues Undergoing Pathogenic Variations in Humans: From Protein Structures to Protein Sequences von Savojardo, Castrense, Manfredi, Matteo, Martelli, Pier Luigi, Casadio, Rita

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Molecular Effects of Mutations in Human Genetic Diseases von Leonardi, Emanuela, Savojardo, Castrense, Minervini, Giovanni

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eDGAR: a database of Disease-Gene Associations with annotated Relationships among genes von Babbi, Giulia, Martelli, Pier Luigi, Profiti, Giuseppe, Bovo, Samuele, Savojardo, Castrense, Casadio, Rita

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Large-scale prediction and analysis of protein sub-mitochondrial localization with DeepMito von Savojardo, Castrense, Martelli, Pier Luigi, Tartari, Giacomo, Casadio, Rita

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TPpred3 detects and discriminates mitochondrial and chloroplastic targeting peptides in eukaryotic proteins von Savojardo, Castrense, Martelli, Pier Luigi, Fariselli, Piero, Casadio, Rita

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Mapping human disease-associated enzymes into Reactome allows characterization of disease groups and their interactions von Savojardo, Castrense, Baldazzi, Davide, Babbi, Giulia, Martelli, Pier Luigi, Casadio, Rita

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SChloro: directing Viridiplantae proteins to six chloroplastic sub-compartments von Savojardo, Castrense, Martelli, Pier Luigi, Fariselli, Piero, Casadio, Rita

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Huntingtin: A Protein with a Peculiar Solvent Accessible Surface von Babbi, Giulia, Savojardo, Castrense, Martelli, Pier Luigi, Casadio, Rita

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BETAWARE: a machine-learning tool to detect and predict transmembrane beta-barrel proteins in prokaryotes von Savojardo, Castrense, Fariselli, Piero, Casadio, Rita

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Functional and Structural Features of Disease-Related Protein Variants von Savojardo, Castrense, Babbi, Giulia, Martelli, Pier Luigi, Casadio, Rita

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Ancient DNA SNP-panel data suggests stability in bluefin tuna genetic diversity despite centuries of fluctuating catches in the eastern Atlantic and Mediterranean von Andrews, Adam J., Puncher, Gregory N., Bernal-Casasola, Darío, Di Natale, Antonio, Massari, Francesco, Onar, Vedat, Toker, Nezir Yaşar, Hanke, Alex, Pavey, Scott A., Savojardo, Castrense, Martelli, Pier Luigi, Casadio, Rita, Cilli, Elisabetta, Morales-Muñiz, Arturo, Mantovani, Barbara, Tinti, Fausto, Cariani, Alessia

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A Glance into MTHFR Deficiency at a Molecular Level von Savojardo, Castrense, Babbi, Giulia, Baldazzi, Davide, Martelli, Pier Luigi, Casadio, Rita

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TPpred2: improving the prediction of mitochondrial targeting peptide cleavage sites by exploiting sequence motifs von Savojardo, Castrense, Martelli, Pier Luigi, Fariselli, Piero, Casadio, Rita

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CoCoNat: A Deep Learning-Based Tool for the Prediction of Coiled-coil Domains in Protein Sequences von Manfredi, Matteo, Savojardo, Castrense, Martelli, Pier Luigi, Casadio, Rita

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