Ligand binding remodels protein side-chain conformational heterogeneity von Wankowicz, Stephanie A, de Oliveira, Saulo H, Hogan, Daniel W, van den Bedem, Henry, Fraser, James S

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qFit 3: Protein and ligand multiconformer modeling for X‐ray crystallographic and single‐particle cryo‐EM density maps von Riley, Blake T., Wankowicz, Stephanie A., Oliveira, Saulo H. P., Zundert, Gydo C. P., Hogan, Daniel W., Fraser, James S., Keedy, Daniel A., Bedem, Henry

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STCRDab: the structural T-cell receptor database von Leem, Jinwoo, de Oliveira, Saulo H P, Krawczyk, Konrad, Deane, Charlotte M

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NGT: Generative AI with Synthesizability Guarantees Discovers MC2R Inhibitors from a Tera-Scale Virtual Screen von P de Oliveira, Saulo H., Pedawi, Aryan, Kenyon, Victor, van den Bedem, Henry

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qFit-ligand Reveals Widespread Conformational Heterogeneity of Drug-Like Molecules in X‑Ray Electron Density Maps von van Zundert, Gydo C. P, Hudson, Brandi M, de Oliveira, Saulo H. P, Keedy, Daniel A, Fonseca, Rasmus, Heliou, Amelie, Suresh, Pooja, Borrelli, Kenneth, Day, Tyler, Fraser, James S, van den Bedem, Henry

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Mix-and-inject XFEL crystallography reveals gated conformational dynamics during enzyme catalysis von Dasgupta, Medhanjali, Budday, Dominik, de Oliveira, Saulo H. P., Madzelan, Peter, Marchany-Rivera, Darya, Seravalli, Javier, Hayes, Brandon, Sierra, Raymond G., Boutet, Sébastien, Hunter, Mark S., Alonso-Mori, Roberto, Batyuk, Alexander, Wierman, Jennifer, Lyubimov, Artem, Brewster, Aaron S., Sauter, Nicholas K., Applegate, Gregory A., Tiwari, Virendra K., Berkowitz, David B., Thompson, Michael C., Cohen, Aina E., Fraser, James S., Wall, Michael E., van den Bedem, Henry, Wilson, Mark A.

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Building a better fragment library for de novo protein structure prediction von de Oliveira, Saulo H P, Shi, Jiye, Deane, Charlotte M

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RFQAmodel: Random Forest Quality Assessment to identify a predicted protein structure in the correct fold von West, Clare E, de Oliveira, Saulo H P, Deane, Charlotte M

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KVFinder: steered identification of protein cavities as a PyMOL plugin von Oliveira, Saulo H P, Ferraz, Felipe A N, Honorato, Rodrigo V, Xavier-Neto, José, Sobreira, Tiago J P, de Oliveira, Paulo S L

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Alternative to antimicrobial growth promoters in the diets of broilers challenged with subclinical necrotic enteritis von da Silva, Paola, Rohloff, Nilton, Catoia, Mariana R.R., Kaufmann, Cristine, Tesser, Guilherme L.S., Weber, Saulo H., Campos, Felipe P., Silva, Luiz F. C. e, Ferreira, Adriana H. do N., Nunes, Ricardo V., Costa, Leandro B.

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Combining co-evolution and secondary structure prediction to improve fragment library generation von de Oliveira, Saulo H P, Deane, Charlotte M

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The evolution of contact prediction: evidence that contact selection in statistical contact prediction is changing von Chonofsky, Mark, de Oliveira, Saulo H P, Krawczyk, Konrad, Deane, Charlotte M

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Sequential search leads to faster, more efficient fragment-based de novo protein structure prediction von de Oliveira, Saulo H P, Law, Eleanor C, Shi, Jiye, Deane, Charlotte M

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Nontrivial effect of dephasing: Enhancement of rectification of spin current in graded XX chains von Silva, Saulo H S, Landi, Gabriel T, Pereira, Emmanuel

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Heat rectification on the XX chain von Silva, Saulo H. S., Landi, Gabriel T., Drumond, Raphael C., Pereira, Emmanuel

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A remote, fully oriented personalized program of physical exercise for women in follow-up after breast cancer treatment improves body composition and physical fitness von França-Lara, Édipo G., Weber, Saulo H., Pinho, Ricardo A., Casali-da-Rocha, José Claudio, Elifio-Esposito, Selene

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Influences of pyrolysis parameters on the physical and chemical fuel qualities of pyrolyzed biomass briquettes for metallurgical use von Borowycz, Marie, Seabra da Rocha, Saulo H. Freitas, Steinmetzger, Tina

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Exploring alternatives for securing anatomical structures in capturing digital images: A comparative analysis von Turchenski, Daniela G., Franco, Acir J., Turchenski, Rafael G., Werner, Laís C., Weber, Saulo H., Gumiel, Yohan B., Michelotto, Pedro V.

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Patterns of copy number alterations in primary breast tumors of South African patients and their impact on functional cellular pathways von Lupicki, Kamil, Elifio-Esposito, Selene, Fonseca, Aline, Weber, Saulo, Sugita, Bruna, Langa, Bridget, Pereira, Silma, Govender, Dhirendra, Panieri, Eugene, Hiss, Donavon, Abdul-Rasool, Sahar, Cavalli, Luciane

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Beyond the Lindblad master equation: Heat, work, and energy currents in boundary-driven spin chains von Reis, Luis H., Silva, Saulo H. S., Pereira, Emmanuel

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