Testing microbiome associations with survival times at both the community and individual taxon levels von Hu, Yingtian, Li, Yunxiao, Satten, Glen A, Hu, Yi-Juan

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Age-associated DNA methylation in pediatric populations von Alisch, Reid S, Barwick, Benjamin G, Chopra, Pankaj, Myrick, Leila K, Satten, Glen A, Conneely, Karen N, Warren, Stephen T

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MIDASim: a fast and simple simulator for realistic microbiome data von He, Mengyu, Zhao, Ni, Satten, Glen A

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Characterization of Bacterial Communities in Selected Smokeless Tobacco Products Using 16S rDNA Analysis von Tyx, Robert E, Stanfill, Stephen B, Keong, Lisa M, Rivera, Angel J, Satten, Glen A, Watson, Clifford H

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Ranked severe maternal morbidity index for population-level surveillance at delivery hospitalization based on hospital discharge data von Kuklina, Elena V, Ewing, Alexander C, Satten, Glen A, Callaghan, William M, Goodman, David A, Ferre, Cynthia D, Ko, Jean Y, Womack, Lindsay S, Galang, Romeo R, Kroelinger, Charlan D

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Testing Rare-Variant Association without Calling Genotypes Allows for Systematic Differences in Sequencing between Cases and Controls von Hu, Yi-Juan, Liao, Peizhou, Johnston, H Richard, Allen, Andrew S, Satten, Glen A

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Associations between microbial communities and key chemical constituents in U.S. domestic moist snuff von Tyx, Robert E, Rivera, Angel J, Satten, Glen A, Keong, Lisa M, Kuklenyik, Peter, Lee, Grace E, Lawler, Tameka S, Kimbrell, Jacob B, Stanfill, Stephen B, Valentin-Blasini, Liza, Watson, Clifford H

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A Permutation Procedure to Correct for Confounders in Case-Control Studies, Including Tests of Rare Variation von Epstein, Michael P., Duncan, Richard, Jiang, Yunxuan, Conneely, Karen N., Allen, Andrew S., Satten, Glen A.

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Constraining PERMANOVA and LDM to within-set comparisons by projection improves the efficiency of analyses of matched sets of microbiome data von Zhu, Zhengyi, Satten, Glen A, Mitchell, Caroline, Hu, Yi-Juan

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Vaginal Microbiome Composition in Early Pregnancy and Risk of Spontaneous Preterm and Early Term Birth Among African American Women von Dunlop, Anne L, Satten, Glen A, Hu, Yi-Juan, Knight, Anna K, Hill, Cherie C, Wright, Michelle L, Smith, Alicia K, Read, Timothy D, Pearce, Bradley D, Corwin, Elizabeth J

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Testing hypotheses about the microbiome using the linear decomposition model (LDM) von Hu, Yi-Juan, Satten, Glen A

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Inference on Haplotype Effects in Case-Control Studies Using Unphased Genotype Data von Epstein, Michael P., Satten, Glen A.

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Restoring the Duality between Principal Components of a Distance Matrix and Linear Combinations of Predictors, with Application to Studies of the Microbiome von Satten, Glen A, Tyx, Robert E, Rivera, Angel J, Stanfill, Stephen

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LOCOM: A logistic regression model for testing differential abundance in compositional microbiome data with false discovery rate control von Hu, Yingtian, Satten, Glen A, Hu, Yi-Juan

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Stability of the vaginal, oral, and gut microbiota across pregnancy among African American women: the effect of socioeconomic status and antibiotic exposure von Dunlop, Anne L, Knight, Anna K, Satten, Glen A, Cutler, Anya J, Wright, Michelle L, Mitchell, Rebecca M, Read, Timothy D, Mulle, Jennifer, Hertzberg, Vicki S, Hill, Cherie C, Smith, Alicia K, Corwin, Elizabeth J

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A rarefaction-based extension of the LDM for testing presence–absence associations in the microbiome von Hu, Yi-Juan, Lane, Andrea, Satten, Glen A

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Integrative analysis of relative abundance data and presence-absence data of the microbiome using the LDM von Zhu, Zhengyi, Satten, Glen A, Hu, Yi-Juan

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Compositional analysis of microbiome data using the linear decomposition model (LDM) von Hu, Yi-Juan, Satten, Glen A

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A rarefaction-without-resampling extension of PERMANOVA for testing presence–absence associations in the microbiome von Hu, Yi-Juan, Satten, Glen A

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Integrative analysis of relative abundance data and presence–absence data of the microbiome using the LDM von Zhu, Zhengyi, Satten, Glen A, Hu, Yi-Juan

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