MIPModDB: a central resource for the superfamily of major intrinsic proteins von Gupta, A. B., Verma, R. K., Agarwal, V., Vajpai, M., Bansal, V., Sankararamakrishnan, R.

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Plasticity of hydrophobic grooves in anti-apoptotic Bcl-2 proteins von Sankararamakrishnan, R

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Water in channel-like cavities: structure and dynamics von Sansom, M.S., Kerr, I.D., Breed, J., Sankararamakrishnan, R.

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Enforcing solution phase nanoscopic aggregation in a palindromic tripeptide von Prasad, K Krishna, Purohit, C S, Jain, Alok, Sankararamakrishnan, R, Verma, Sandeep

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The pore domain of the nicotinic acetylcholine receptor: molecular modeling, pore dimensions, and electrostatics von Sankararamakrishnan, R., Adcock, C., Sansom, M.S.

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Molecular dynamics simulations of water within models of ion channels von Breed, J., Sankararamakrishnan, R., Kerr, I.D., Sansom, M.S.

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Parallel helix bundles and ion channels: molecular modeling via simulated annealing and restrained molecular dynamics von Kerr, I.D., Sankararamakrishnan, R., Smart, O.S., Sansom, M.S.

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Prediction of translation initiation sites in human mRNA sequences with AUG start codon in weak Kozak context: A neural network approach von Tikole, Suhas, Sankararamakrishnan, Ramasubbu

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ATCUN-like metal-binding motifs in proteins: Identification and characterization by crystal structure and sequence analysis von Sankararamakrishnan, Ramasubbu, Verma, Sandeep, Kumar, Sandeep

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Solvation in simulated annealing and high-temperature molecular dynamics of proteins: A restrained water droplet model von Sankararamakrishnan, R., Konvicka, K., Mehler, E. L., Weinstein, H.

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Self-contacts in Asx and Glx residues of high-resolution protein structures: Role of local environment and tertiary interactions von Pal, Tuhin Kumar, Sankararamakrishnan, Ramasubbu

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Characterization of proline-containing α-helix (helix F model of bacteriorhodopsin) by molecular dynamics studies von Sankararamakrishnan, R., Vishveshwara, Saraswathi

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Water-mediated conformational transitions in nicotinic receptor M2 helix bundles: a molecular dynamics study von Sankararamakrishnan, R., Sansom, M.S.P.

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Surface Tension Parameterization in Molecular Dynamics Simulations of a Phospholipid-bilayer Membrane:  Calibration and Effects von Sankararamakrishnan, Ramasubbu, Weinstein, Harel

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Molecular Dynamics Simulations Predict a Tilted Orientation for the Helical Region of Dynorphin A(1–17) in Dimyristoylphosphatidylcholine Bilayers von Sankararamakrishnan, Ramasubbu, Weinstein, Harel

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Conformational studies on peptides with proline in the right-handed α-helical region von Sankararamakrishnan, R., Vishveshwara, Saraswathi

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Solvation, water permeation, and ionic selectivity of a putative model for the pore region of the voltage-gated sodium channel von Singh, C., Sankararamakrishnan, R., Subramaniam, S., Jakobsson, E.

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Molecular dynamics simulations of isolated transmembrane helices of potassium channels von Kerr, Ian D., Son, Hyeon S., Sankararamakrishnan, R., Sansom, Mark S. P.

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Modelling packing interactions in parallel helix bundles: pentameric bundles of nicotinic receptor M2 helices von Sankararamakrishnan, R., Sansom, M.S.P.

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Geometry of proline-containing alpha-helices in proteins von SANKARARAMAKRISHNAN, R., VISHVESHWARA, SARASWATHI

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