Simulating Movement of tRNA into the Ribosome during Decoding von Sanbonmatsu, Kevin Y., Joseph, Simpson, Chang-Shung Tung, Uhlenbeck, Olke C.

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α-Helical Stabilization by Side Chain Shielding of Backbone Hydrogen Bonds von García, Angel E., Sanbonmatsu, Kevin Y.

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Spontaneous formation of the unlocked state of the ribosome is a multistep process von Munro, James B, Altman, Roger B, Tung, Chang-Shung, Cate, Jamie H.D, Sanbonmatsu, Kevin Y, Blanchard, Scott C

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An all-atom structure-based potential for proteins: Bridging minimal models with all-atom empirical forcefields von Whitford, Paul C., Noel, Jeffrey K., Gosavi, Shachi, Schug, Alexander, Sanbonmatsu, Kevin Y., Onuchic, José N.

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Domain motions of Argonaute, the catalytic engine of RNA interference von Ming, Dengming, Wall, Michael E, Sanbonmatsu, Kevin Y

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Stochastic Gating and Drug–Ribosome Interactions von Vaiana, Andrea C., Sanbonmatsu, Kevin Y.

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Navigating the ribosome's metastable energy landscape von Munro, James B., Sanbonmatsu, Kevin Y., Spahn, Christian M.T., Blanchard, Scott C.

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Nonlocal Helix Formation Is Key to Understanding S-Adenosylmethionine-1 Riboswitch Function von Whitford, Paul C., Schug, Alexander, Saunders, John, Hennelly, Scott P., Onuchic, José N., Sanbonmatsu, Kevin Y.

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A fast dynamic mode of the EF-G-bound ribosome von Munro, James B, Altman, Roger B, Tung, Chang-Shung, Sanbonmatsu, Kevin Y, Blanchard, Scott C

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Peptide folding simulations von Gnanakaran, S, Nymeyer, Hugh, Portman, John, Sanbonmatsu, Kevin Y, Garcı́a, Angel E

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A new view of protein synthesis: Mapping the free energy landscape of the ribosome using single-molecule FRET von Munro, James B., Vaiana, Andrea, Sanbonmatsu, Kevin Y., Blanchard, Scott C.

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Atomic Model of the Thermus thermophilus 70S Ribosome Developed in Silico von Tung, Chang-Shung, Sanbonmatsu, Kevin Y.

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All-atom homology model of the Escherichia coli 30S ribosomal subunit von Tung, Chang-Shung, Joseph, Simpson, Sanbonmatsu, Kevin Y.

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Exploring the energy landscape of a β hairpin in explicit solvent von García, Angel E., Sanbonmatsu, Kevin Y.

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Exploring the energy landscape of a ? hairpin in explicit solvent von Garc a, Angel E., Sanbonmatsu, Kevin Y.

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Simulations of the Bacterial Ribosomal Decoding Switch von Vaiana, Andrea C., Grubmueller, Helmut, Sanbonmatsu, Kevin Y.

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Simulations of the Ribosome Suggest Reversible Transitions and Parallel Pathways are Involved in the Large-Scale Functional Motions of tRNA During Translation von Whitford, Paul C., Geggier, Peter, Altman, Roger, Blanchard, Scott C., Onuchic, Jose' N., Sanbonmatsu, Kevin Y.

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Dynamic Mode Switching and Loosely Coupled Conformational Events Observed in Single Ribosomes von Munro, James B., Altman, Roger B., Tung, Chang-Shung, Cate, Jamie H.D., Sanbonmatsu, Kevin Y., Blanchard, Scott C.

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All-atom Models For RNA And Proteins: Simulating Folding And Function von Whitford, Paul C., Schug, Alexander, Noel, Jeffrey K., Gosavi, Shachi, Hennelly, Scott P., Sanbonmatsu, Kevin Y., Onuchic, Jose' N.

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Single Molecule Series A New View of Protein Synthesis: Mapping the Free Energy Landscape of the Ribosome Using Single-Molecule FRET von Munro, James B., Vaiana, Andrea, Sanbonmatsu, Kevin Y., Blanchard, Scott C.

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