Conifer: clonal tree inference for tumor heterogeneity with single-cell and bulk sequencing data von Baghaarabani, Leila, Goliaei, Sama, Foroughmand-Araabi, Mohammad-Hadi, Shariatpanahi, Seyed Peyman, Goliaei, Bahram

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Scelestial: Fast and accurate single-cell lineage tree inference based on a Steiner tree approximation algorithm von Foroughmand-Araabi, Mohammad-Hadi, Goliaei, Sama, McHardy, Alice C

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A Boolean network control algorithm guided by forward dynamic programming von Moradi, Mohammad, Goliaei, Sama, Foroughmand-Araabi, Mohammad-Hadi

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Importations of SARS-CoV-2 lineages decline after nonpharmaceutical interventions in phylogeographic analyses von Goliaei, Sama, Foroughmand-Araabi, Mohammad-Hadi, Roddy, Aideen, Weber, Ariane, Översti, Sanni, Kühnert, Denise, McHardy, Alice C.

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A Game-Theoretical Network Formation Model for C. elegans Neural Network von Khajezade, Mohamad, Goliaei, Sama, Veisi, Hadi

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Distinct Dynamics of Migratory Response to PD-1 and CTLA-4 Blockade Reveals New Mechanistic Insights for Potential T-Cell Reinvigoration following Immune Checkpoint Blockade von Safaeifard, Fateme, Goliaei, Bahram, Aref, Amir R, Foroughmand-Araabi, Mohammad-Hadi, Goliaei, Sama, Lorch, Jochen, Jenkins, Russell W, Barbie, David A, Shariatpanahi, Seyed Peyman, Rüegg, Curzio

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The number of followings as an influential factor in rumor spreading von Bodaghi, Amirhosein, Goliaei, Sama, Salehi, Mostafa

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Embedding ranking-oriented recommender system graphs von Hekmatfar, Taher, Haratizadeh, Saman, Goliaei, Sama

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CAMIRADA: Cancer microRNA association discovery algorithm, a case study on breast cancer von Shamsizadeh, Sepideh, Goliaei, Sama, Razaghi Moghadam, Zahra

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Computation with optical sensitive sheets von Goliaei, Sama, Jalili, Saeed

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HybridRanker: Integrating network topology and biomedical knowledge to prioritize cancer candidate genes von Razaghi-Moghadam, Zahra, Abdollahi, Razieh, Goliaei, Sama, Ebrahimi, Morteza

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An optical solution to the 3-SAT problem using wavelength based selectors von Goliaei, Sama, Jalili, Saeed

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Light-based solution for the dominating set problem von Goliaei, Sama, Jalili, Saeed, Salimi, Javad

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Abstract Geometrical Computation 10: An Intrinsically Universal Family of Signal Machines von Becker, Florent, Besson, Tom, Durand-Lose, Jérôme, Emmanuel, Aurélien, Foroughmand-Araabi, Mohammad-Hadi, Goliaei, Sama, Heydarshahi, Shahrzad

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A 2-dimensional optical architecture for solving Hamiltonian path problem based on micro ring resonators von Shakeri, Nadim, Jalili, Saeed, Ahmadi, Vahid, Rasoulzadeh Zali, Aref, Goliaei, Sama

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Identifying Cancer Subnetwork Markers Using Game Theory Method von Farahmand, Saman, Goliaei, Sama, Kashani, Zahra Razaghi Moghadam, Farahmand, Sina

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Associating Protein Interactions with Disease Comorbidity to Prioritize Colorectal Cancer Genes von Demneh, Sayedeh Razieh Abdollahi, Goliaei, Sama, Moghadam, Zahra Razaghi

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On the complexity of nonuniform wavelength-based machine von Goliaei, Sama, Foroughmand-Araabi, Mohammad-Hadi

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An Optical Polynomial Time Solution for the Satisfiability Problem von Goliaei, Sama, Jalili, Saeed

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Light Ray Concentration Reduces the Complexity of the Wavelength-Based Machine on PSPACE Languages von Goliaei, Sama, Foroughmand-Araabi, Mohammad-Hadi

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