REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets von Marchet, Camille, Iqbal, Zamin, Gautheret, Daniel, Salson, Mikaël, Chikhi, Rayan

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Data structures based on k-mers for querying large collections of sequencing data sets von Marchet, Camille, Boucher, Christina, Puglisi, Simon J., Medvedev, Paul, Salson, Mikael, Chikhi, Rayan

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CRAC: an integrated approach to the analysis of RNA-seq reads von Philippe, Nicolas, Salson, Mikaël, Commes, Thérèse, Rivals, Eric

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DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition von Audoux, Jérôme, Philippe, Nicolas, Chikhi, Rayan, Salson, Mikaël, Gallopin, Mélina, Gabriel, Marc, Le Coz, Jérémy, Drouineau, Emilie, Commes, Thérèse, Gautheret, Daniel

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Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic leukaemia; a EuroClonality-NG... von Brüggemann, Monika, Kotrová, Michaela, Knecht, Henrik, Bartram, Jack, Boudjogrha, Myriam, Bystry, Vojtech, Fazio, Grazia, Froňková, Eva, Giraud, Mathieu, Grioni, Andrea, Hancock, Jeremy, Herrmann, Dietrich, Jiménez, Cristina, Krejci, Adam, Moppett, John, Reigl, Tomas, Salson, Mikael, Scheijen, Blanca, Schwarz, Martin, Songia, Simona, Svaton, Michael, van Dongen, Jacques J. M., Villarese, Patrick, Wakeman, Stephanie, Wright, Gary, Cazzaniga, Giovanni, Davi, Frédéric, García-Sanz, Ramón, Gonzalez, David, Groenen, Patricia J. T. A., Hummel, Michael, Macintyre, Elizabeth A., Stamatopoulos, Kostas, Pott, Christiane, Trka, Jan, Darzentas, Nikos, Langerak, Anton W.

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Frugal alignment-free identification of FLT3-internal tandem duplications with FiLT3r von Boudry, Augustin, Darmon, Sasha, Duployez, Nicolas, Figeac, Martin, Geffroy, Sandrine, Bucci, Maxime, Celli-Lebras, Karine, Duchmann, Matthieu, Joudinaud, Romane, Fenwarth, Laurène, Nibourel, Olivier, Goursaud, Laure, Itzykson, Raphael, Dombret, Hervé, Hunault, Mathilde, Preudhomme, Claude, Salson, Mikaël

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Transipedia.org: k-mer-based exploration of large RNA sequencing datasets and application to cancer data von Bessière, Chloé, Xue, Haoliang, Guibert, Benoit, Boureux, Anthony, Rufflé, Florence, Viot, Julien, Chikhi, Rayan, Salson, Mikaël, Marchet, Camille, Commes, Thérèse, Gautheret, Daniel

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High-throughput sequencing in acute lymphoblastic leukemia: Follow-up of minimal residual disease and emergence of new clones von Salson, Mikaël, Giraud, Mathieu, Caillaul, Aurélie, Grardel, Nathalie, Duployez, Nicolas, Ferret, Yann, Duez, Marc, Herbert, Ryan, Rocher, Tatiana, Sebda, Shéhérazade, Quief, Sabine, Villenet, Céline, Figeac, Martin, Preudhomme, Claude

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From Sequences to Graphs: Discrete Methods and Structures for Bioinformatics von Chateau, Annie, Salson, Mikaël

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Vidjil: A Web Platform for Analysis of High-Throughput Repertoire Sequencing von Duez, Marc, Giraud, Mathieu, Herbert, Ryan, Rocher, Tatiana, Salson, Mikaël, Thonier, Florian

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Indexing labeled sequences von Rocher, Tatiana, Giraud, Mathieu, Salson, Mikaël

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From Sequences to Graphs von Chateau, Annie, Salson, Mikael

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Approximate search of short patterns with high error rates using the 01⁎0 lossless seeds von Vroland, Christophe, Salson, Mikaël, Bini, Sébastien, Touzet, Hélène

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The predictive strength of next-generation sequencing MRD detection for relapse compared with current methods in childhood ALL von Kotrova, Michaela, Muzikova, Katerina, Mejstrikova, Ester, Novakova, Michaela, Bakardjieva-Mihaylova, Violeta, Fiser, Karel, Stuchly, Jan, Giraud, Mathieu, Salson, Mikaël, Pott, Christiane, Brüggemann, Monika, Füllgrabe, Marc, Stary, Jan, Trka, Jan, Fronkova, Eva

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SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelines von Audoux, Jérôme, Salson, Mikaël, Grosset, Christophe F, Beaumeunier, Sacha, Holder, Jean-Marc, Commes, Thérèse, Philippe, Nicolas

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Publisher Correction: Frugal alignment-free identification of FLT3-internal tandem duplications with FiLT3r von Boudry, Augustin, Darmon, Sasha, Duployez, Nicolas, Figeac, Martin, Geffroy, Sandrine, Bucci, Maxime, Celli-Lebras, Karine, Duchmann, Matthieu, Joudinaud, Romane, Fenwarth, Laurène, Nibourel, Olivier, Goursaud, Laure, Itzykson, Raphael, Dombret, Hervé, Hunault, Mathilde, Preudhomme, Claude, Salson, Mikaël

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Multi‐loci diagnosis of acute lymphoblastic leukaemia with high‐throughput sequencing and bioinformatics analysis von Ferret, Yann, Caillault, Aurélie, Sebda, Shéhérazade, Duez, Marc, Grardel, Nathalie, Duployez, Nicolas, Villenet, Céline, Figeac, Martin, Preudhomme, Claude, Salson, Mikaël, Giraud, Mathieu

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Fast multiclonal clusterization of V(D)J recombinations from high-throughput sequencing von Giraud, Mathieu, Salson, Mikaël, Duez, Marc, Villenet, Céline, Quief, Sabine, Caillault, Aurélie, Grardel, Nathalie, Roumier, Christophe, Preudhomme, Claude, Figeac, Martin

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Correction: Vidjil: A Web Platform for Analysis of High-Throughput Repertoire Sequencing von Duez, Marc, Giraud, Mathieu, Herbert, Ryan, Rocher, Tatiana, Salson, Mikaël, Thonier, Florian

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Lossless Seeds for Searching Short Patterns with High Error Rates von Vroland, Christophe, Salson, Mikaël, Touzet, Hélène

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