The global spread of 2019-nCoV: a molecular evolutionary analysis von Benvenuto, Domenico, Giovanetti, Marta, Salemi, Marco, Prosperi, Mattia, De Flora, Cecilia, Junior Alcantara, Luiz Carlos, Angeletti, Silvia, Ciccozzi, Massimo

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The intra-host evolutionary and population dynamics of human immunodeficiency virus type 1: a phylogenetic perspective von Salemi, Marco

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Isolation of a Novel Recombinant Canine Coronavirus From a Visitor to Haiti: Further Evidence of Transmission of Coronaviruses of Zoonotic Origin to Humans von Lednicky, John A, Tagliamonte, Massimiliano S, White, Sarah K, Blohm, Gabriela M, Alam, Md Mahbubul, Iovine, Nicole M, Salemi, Marco, Mavian, Carla, Morris, J Glenn

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DeepDynaForecast: Phylogenetic-informed graph deep learning for epidemic transmission dynamic prediction von Sun, Chaoyue, Fang, Ruogu, Salemi, Marco, Prosperi, Mattia, Rife Magalis, Brittany

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ARCA: the interactive database for arbovirus reported cases in the Americas von Meneses, Maria V, Riva, Alberto, Salemi, Marco, Mavian, Carla

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Structure of the HIV-1 RNA packaging signal von Keane, Sarah C., Heng, Xiao, Lu, Kun, Kharytonchyk, Siarhei, Ramakrishnan, Venkateswaran, Carter, Gregory, Barton, Shawn, Hosic, Azra, Florwick, Alyssa, Santos, Justin, Bolden, Nicholas C., McCowin, Sayo, Case, David A., Johnson, Bruce A., Salemi, Marco, Telesnitsky, Alice, Summers, Michael F.

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Accounting for alignment uncertainty in phylogenomics von Wu, Martin, Chatterji, Sourav, Eisen, Jonathan A

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Mayaro Virus in Child with Acute Febrile Illness, Haiti, 2015 von Lednicky, John, De Rochars, Valery Madsen Beau, Elbadry, Maha, Loeb, Julia, Telisma, Taina, Chavannes, Sonese, Anilis, Gina, Cella, Eleonora, Ciccozzi, Massinno, Okech, Bernard, Salemi, Marco, Morris, Jr, J Glenn

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In-depth phylodynamics, evolutionary analysis and in silico predictions of universal epitopes of Influenza A subtypes and Influenza B viruses von Durães-Carvalho, Ricardo, Salemi, Marco

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A minor population of macrophage-tropic HIV-1 variants is identified in recrudescing viremia following analytic treatment interruption von Andrade, Viviane M., Mavian, Carla, Babic, Dunja, Cordeiro, Thaissa, Sharkey, Mark, Barrios, Labelle, Brander, Christian, Martinez-Picado, Javier, Dalmau, Judith, Llano, Anuska, Li, Jonathan Z., Jacobson, Jeffrey, Lavine, Christy L., Seaman, Michael S., Salemi, Marco, Stevenson, Mario

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Collection of SARS-CoV-2 Virus from the Air of a Clinic within a University Student Health Care Center and Analyses of the Viral Genomic Sequence von Lednicky, John A., Shankar, Sripriya N., Elbadry, Maha A., Gibson, Julia C., Alam, Md Mahbubul, Stephenson, Caroline J., Eiguren-Fernandez, Arantzazu, Morris, J. Glenn, Mavian, Carla N., Salemi, Marco, Clugston, James R., Wu, Chang-Yu

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An index of substitution saturation and its application von Xia, Xuhua, Xie, Zheng, Salemi, Marco, Chen, Lu, Wang, Yong

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Emergence of recombinant Mayaro virus strains from the Amazon basin von Mavian, Carla, Rife, Brittany D., Dollar, James Jarad, Cella, Eleonora, Ciccozzi, Massimo, Prosperi, Mattia C. F., Lednicky, John, Morris, J. Glenn, Capua, Ilaria, Salemi, Marco

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Genome and plasmid diversity of Extended-Spectrum β-Lactamase-producing Escherichia coli ST131 – tracking phylogenetic trajectories with Bayesian inference von Ny, Sofia, Sandegren, Linus, Salemi, Marco, Giske, Christian G.

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18S rDNA phylogeny of lamproderma and allied genera (Stemonitales, Myxomycetes, Amoebozoa) von Fiore-Donno, Anna Maria, Kamono, Akiko, Meyer, Marianne, Schnittler, Martin, Fukui, Manabu, Cavalier-Smith, Thomas

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Predicting emerging SARS-CoV-2 variants of concern through a One Class dynamic anomaly detection algorithm von Nicora, Giovanna, Salemi, Marco, Marini, Simone, Bellazzi, Riccardo

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Zika Virus Outbreak in Haiti in 2014: Molecular and Clinical Data von Lednicky, John, Beau De Rochars, Valery Madsen, El Badry, Maha, Loeb, Julia, Telisma, Taina, Chavannes, Sonese, Anilis, Gina, Cella, Eleonora, Ciccozzi, Massimo, Rashid, Mohammed, Okech, Bernard, Salemi, Marco, Morris, Jr, J Glenn

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The Spleen Is an HIV-1 Sanctuary During Combined Antiretroviral Therapy von Nolan, David J, Rose, Rebecca, Rodriguez, Patricia H, Salemi, Marco, Singer, Elyse J, Lamers, Susanna L, McGrath, Michael S

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Multiple Recombination Events and Strong Purifying Selection at the Origin of SARS-CoV-2 Spike Glycoprotein Increased Correlated Dynamic Movements von Tagliamonte, Massimiliano S., Abid, Nabil, Borocci, Stefano, Sangiovanni, Elisa, Ostrov, David A., Kosakovsky Pond, Sergei L., Salemi, Marco, Chillemi, Giovanni, Mavian, Carla

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Seafood-Associated Outbreak of ctx -Negative Vibrio mimicus Causing Cholera-Like Illness, Florida, USA von Alam, Meer T, Stern, Sarah R, Frison, Devin, Taylor, Katie, Tagliamonte, Massimiliano S, Nazmus, S. Sakib, Paisie, Taylor, Hilliard, Nicole B, Jones, Riley G, Iovine, Nicole M, Cherabuddi, Kartik, Mavian, Carla, Myers, Paul, Salemi, Marco, Ali, Afsar, Morris, J. Glenn, Jr

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