Visualization and analysis of gene expression in tissue sections by spatial transcriptomics von Ståhl, Patrik L., Salmén, Fredrik, Vickovic, Sanja, Lundmark, Anna, Navarro, José Fernández, Magnusson, Jens, Giacomello, Stefania, Asp, Michaela, Westholm, Jakub O., Huss, Mikael, Mollbrink, Annelie, Linnarsson, Sten, Codeluppi, Simone, Borg, Åke, Pontén, Fredrik, Costea, Paul Igor, Sahlén, Pelin, Mulder, Jan, Bergmann, Olaf, Lundeberg, Joakim, Frisén, Jonas

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Current challenges in understanding the role of enhancers in disease von Zaugg, Judith Barbara, Sahlén, Pelin, Andersson, Robin, Alberich-Jorda, Meritxell, de Laat, Wouter, Deplancke, Bart, Ferrer, Jorge, Mandrup, Susanne, Natoli, Gioacchino, Plewczynski, Dariusz, Rada-Iglesias, Alvaro, Spicuglia, Salvatore

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Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution von Sahlén, Pelin, Abdullayev, Ilgar, Ramsköld, Daniel, Matskova, Liudmila, Rilakovic, Nemanja, Lötstedt, Britta, Albert, Thomas J, Lundeberg, Joakim, Sandberg, Rickard

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Allele specific chromatin signals, 3D interactions, and motif predictions for immune and B cell related diseases von Cavalli, Marco, Baltzer, Nicholas, Umer, Husen M., Grau, Jan, Lemnian, Ioana, Pan, Gang, Wallerman, Ola, Spalinskas, Rapolas, Sahlén, Pelin, Grosse, Ivo, Komorowski, Jan, Wadelius, Claes

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The BAF and PRC2 Complex Subunits Dpf2 and Eed Antagonistically Converge on Tbx3 to Control ESC Differentiation von Zhang, Wensheng, Chronis, Constantinos, Chen, Xi, Zhang, Heyao, Spalinskas, Rapolas, Pardo, Mercedes, Chen, Liangliang, Wu, Guangming, Zhu, Zhexin, Yu, Yong, Yu, Lu, Choudhary, Jyoti, Nichols, Jennifer, Parast, Mana M., Greber, Boris, Sahlén, Pelin, Plath, Kathrin

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SPP1/osteopontin: a driver of fibrosis and inflammation in degenerative ascending aortic aneurysm? von Freiholtz, David, Bergman, Otto, Pradhananga, Sailendra, Lång, Karin, Poujade, Flore-Anne, Granath, Carl, Olsson, Christian, Franco-Cereceda, Anders, Sahlén, Pelin, Eriksson, Per, Björck, Hanna M.

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Prenylcysteine Oxidase 1 Is a Key Regulator of Adipogenesis von Banfi, Cristina, Mallia, Alice, Ghilardi, Stefania, Brioschi, Maura, Gianazza, Erica, Eligini, Sonia, Sahlén, Pelin, Baetta, Roberta

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A Multi-Omics Approach to Liver Diseases: Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver von Cavalli, Marco, Diamanti, Klev, Pan, Gang, Spalinskas, Rapolas, Kumar, Chanchal, Deshmukh, Atul Shahaji, Mann, Matthias, Sahlén, Pelin, Komorowski, Jan, Wadelius, Claes

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Chromatin interactions in differentiating keratinocytes reveal novel atopic dermatitis– and psoriasis-associated genes von Sahlén, Pelin, Spalinskas, Rapolas, Asad, Samina, Mahapatra, Kunal Das, Höjer, Pontus, Anil, Anandashankar, Eisfeldt, Jesper, Srivastava, Ankit, Nikamo, Pernilla, Mukherjee, Anaya, Kim, Kyu-Han, Bergman, Otto, Ståhle, Mona, Sonkoly, Enikö, Pivarcsi, Andor, Wahlgren, Carl-Fredrik, Nordenskjöld, Magnus, Taylan, Fulya, Bradley, Maria, Tapia-Páez, Isabel

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An endothelial regulatory module links blood pressure regulation with elite athletic performance von Fegraeus, Kim, Rosengren, Maria K, Naboulsi, Rakan, Orlando, Ludovic, Åbrink, Magnus, Jouni, Ahmad, Velie, Brandon D, Raine, Amanda, Egner, Beate, Mattsson, C Mikael, Lång, Karin, Zhigulev, Artemy, Björck, Hanna M, Franco-Cereceda, Anders, Eriksson, Per, Andersson, Göran, Sahlén, Pelin, Meadows, Jennifer R S, Lindgren, Gabriella

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Enhancer mutations modulate the severity of chemotherapy-induced myelosuppression von Zhigulev, Artemy, Norberg, Zandra, Cordier, Julie, Spalinskas, Rapolas, Bassereh, Hassan, Björn, Niclas, Pradhananga, Sailendra, Gréen, Henrik, Sahlén, Pelin

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High-Resolution Regulatory Maps Connect Vascular Risk Variants to Disease-Related Pathways von Åkerborg, Örjan, Spalinskas, Rapolas, Pradhananga, Sailendra, Anil, Anandashankar, Höjer, Pontus, Poujade, Flore-Anne, Folkersen, Lasse, Eriksson, Per, Sahlén, Pelin

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Whole-genome sequencing and gene network modules predict gemcitabine/carboplatin-induced myelosuppression in non-small cell lung cancer patients von Björn, Niclas, Badam, Tejaswi Venkata Satya, Spalinskas, Rapolas, Brandén, Eva, Koyi, Hirsh, Lewensohn, Rolf, De Petris, Luigi, Lubovac-Pilav, Zelmina, Sahlén, Pelin, Lundeberg, Joakim, Gustafsson, Mika, Gréen, Henrik

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HiCapTools: a software suite for probe design and proximity detection for targeted chromosome conformation capture applications von Anil, Anandashankar, Spalinskas, Rapolas, Åkerborg, Örjan, Sahlén, Pelin

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Variants That Differentiate Wolf and Dog Populations Are Enriched in Regulatory Elements von Sahlén, Pelin, Yanhu, Liu, Xu, Jinrui, Kubinyi, Eniko, Wang, Guo-Dong, Savolainen, Peter

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Promoter anchored interaction landscape of THP-1 macrophages captures early immune response processes von Pradhananga, Sailendra, Spalinskas, Rapolas, Poujade, Flore-Anne, Eriksson, Per, Sahlén, Pelin

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Nanopore arrays in a silicon membrane for parallel single-molecule detection: DNA translocation von Zhang, Miao, Schmidt, Torsten, Jemt, Anders, Sahlén, Pelin, Sychugov, Ilya, Lundeberg, Joakim, Linnros, Jan

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Exploring the Role of the Ado Gene in Atopic Dermatitis von Wang, Sailan, Vaz, Raquel, Sahlén, Pelin, Wahlgren, Carl-Fredrik, Nordenskjold, Magnus, Tapia-Paez, Isabel, Bradley, Maria

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The Role Of Rare Enhancer Variants In Bicuspid Aortic Valve Pathology von Zhigulev, Artemii, Lang, K., Pradhananga, Sailendra, Spalinskas, Rapolas, Franco-Cereceda, A., Bjorck, H., Eriksson, P., Sahlén, Pelin

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An endothelial regulatory module links blood pressure regulation with elite athletic performance von Fegraeus, Kim, Rosengren, Maria, Naboulsi, Rakan, Orlando, Ludovic, Åbrink, Magnus, Jouni, Ahmad, Velie, Brandon, Raine, Amanda, Egner, Beate, Mattsson, C Mikael, Lång, Karin, Zhigulev, Artemy, Björck, Hanna, Franco-Cereceda, Anders, Eriksson, Per, Andersson, Göran, Sahlén, Pelin, Meadows, Jennifer, Lindgren, Gabriella

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