Source–sink relationships during early crop development influence earliness of sugar accumulation in sugarcane von Saez, Julio V, Mariotti, Jorge A, Vega, Claudia R C

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Physiological bases of genetic gains in sugarcane yield in Argentina von Acreche, Martín M., Saez, Julio V., Chalco Vera, Jorge

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Causal integration of multi‐omics data with prior knowledge to generate mechanistic hypotheses von Dugourd, Aurelien, Kuppe, Christoph, Sciacovelli, Marco, Gjerga, Enio, Gabor, Attila, Emdal, Kristina B., Vieira, Vitor, Bekker‐Jensen, Dorte B., Kranz, Jennifer, Bindels, Eric.M.J., Costa, Ana S.H., Sousa, Abel, Beltrao, Pedro, Rocha, Miguel, Olsen, Jesper V., Frezza, Christian, Kramann, Rafael, Saez‐Rodriguez, Julio

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A comprehensive database for integrated analysis of omics data in autoimmune diseases von Martorell-Marugán, Jordi, López-Domínguez, Raúl, García-Moreno, Adrián, Toro-Domínguez, Daniel, Villatoro-García, Juan Antonio, Barturen, Guillermo, Martín-Gómez, Adoración, Troule, Kevin, Gómez-López, Gonzalo, Al-Shahrour, Fátima, González-Rumayor, Víctor, Peña-Chilet, María, Dopazo, Joaquín, Sáez-Rodríguez, Julio, Alarcón-Riquelme, Marta E, Carmona-Sáez, Pedro

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Epidemiological investigation of bovine tuberculosis herd breakdowns in Spain 2009/2011 von Guta, Sintayehu, Casal, Jordi, Napp, Sebastian, Saez, Jose Luis, Garcia-Saenz, Ariadna, Perez de Val, Bernat, Romero, Beatriz, Alvarez, Julio, Allepuz, Alberto

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Imbalanced gut microbiota fuels hepatocellular carcinoma development by shaping the hepatic inflammatory microenvironment von Schneider, Kai Markus, Mohs, Antje, Gui, Wenfang, Galvez, Eric J. C., Candels, Lena Susanna, Hoenicke, Lisa, Muthukumarasamy, Uthayakumar, Holland, Christian H., Elfers, Carsten, Kilic, Konrad, Schneider, Carolin Victoria, Schierwagen, Robert, Strnad, Pavel, Wirtz, Theresa H., Marschall, Hanns-Ulrich, Latz, Eicke, Lelouvier, Benjamin, Saez-Rodriguez, Julio, de Vos, Willem, Strowig, Till, Trebicka, Jonel, Trautwein, Christian

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Spatially resolved multiomics on the neuronal effects induced by spaceflight in mice von Masarapu, Yuvarani, Cekanaviciute, Egle, Andrusivova, Zaneta, Westholm, Jakub O., Björklund, Åsa, Fallegger, Robin, Badia-i-Mompel, Pau, Boyko, Valery, Vasisht, Shubha, Saravia-Butler, Amanda, Gebre, Samrawit, Lázár, Enikő, Graziano, Marta, Frapard, Solène, Hinshaw, Robert G., Bergmann, Olaf, Taylor, Deanne M., Wallace, Douglas C., Sylvén, Christer, Meletis, Konstantinos, Saez-Rodriguez, Julio, Galazka, Jonathan M., Costes, Sylvain V., Giacomello, Stefania

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Dynamic 3D proteomes reveal protein functional alterations at high resolution in situ von Cappelletti, Valentina, Hauser, Thomas, Piazza, Ilaria, Pepelnjak, Monika, Malinovska, Liliana, Fuhrer, Tobias, Li, Yaozong, Dörig, Christian, Boersema, Paul, Gillet, Ludovic, Grossbach, Jan, Dugourd, Aurelien, Saez-Rodriguez, Julio, Beyer, Andreas, Zamboni, Nicola, Caflisch, Amedeo, de Souza, Natalie, Picotti, Paola

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Inferring causal molecular networks: empirical assessment through a community-based effort von Hill, Steven M, Heiser, Laura M, Cokelaer, Thomas, Unger, Michael, Nesser, Nicole K, Carlin, Daniel E, Zhang, Yang, Sokolov, Artem, Paull, Evan O, Wong, Chris K, Graim, Kiley, Bivol, Adrian, Wang, Haizhou, Zhu, Fan, Afsari, Bahman, Danilova, Ludmila V, Favorov, Alexander V, Lee, Wai Shing, Taylor, Dane, Hu, Chenyue W, Long, Byron L, Noren, David P, Bisberg, Alexander J, Mills, Gordon B, Gray, Joe W, Kellen, Michael, Norman, Thea, Friend, Stephen, Qutub, Amina A, Fertig, Elana J, Guan, Yuanfang, Song, Mingzhou, Stuart, Joshua M, Spellman, Paul T, Koeppl, Heinz, Stolovitzky, Gustavo, Saez-Rodriguez, Julio, Mukherjee, Sach

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Pharmacogenomic agreement between two cancer cell line data sets von Stransky, Nicolas, Ghandi, Mahmoud, Kryukov, Gregory V, Garraway, Levi A, Lehár, Joseph, Liu, Manway, Sonkin, Dmitriy, Kauffmann, Audrey, Venkatesan, Kavitha, Edelman, Elena J, Riester, Markus, Barretina, Jordi, Caponigro, Giordano, Schlegel, Robert, Sellers, William R, Stegmeier, Frank, Morrissey, Michael, Amzallag, Arnaud, Pruteanu-Malinici, Iulian, Haber, Daniel A, Ramaswamy, Sridhar, Benes, Cyril H, Menden, Michael P, Iorio, Francesco, Stratton, Michael R, McDermott, Ultan, Garnett, Mathew J, Saez-Rodriguez, Julio

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A community effort to assess and improve drug sensitivity prediction algorithms von Costello, James C, Heiser, Laura M, Georgii, Elisabeth, Gönen, Mehmet, Menden, Michael P, Wang, Nicholas J, Bansal, Mukesh, Ammad-ud-din, Muhammad, Hintsanen, Petteri, Khan, Suleiman A, Mpindi, John-Patrick, Kallioniemi, Olli, Honkela, Antti, Aittokallio, Tero, Wennerberg, Krister, Collins, James J, Gallahan, Dan, Singer, Dinah, Saez-Rodriguez, Julio, Kaski, Samuel, Gray, Joe W, Stolovitzky, Gustavo

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MAPK pathway and B cells overactivation in multiple sclerosis revealed by phosphoproteomics and genomic analysis von Kotelnikova, Ekaterina, Kiani, Narsis A., Messinis, Dimitris, Pertsovskaya, Inna, Pliaka, Vicky, Bernardo-Faura, Marti, Rinas, Melanie, Vila, Gemma, Zubizarreta, Irati, Pulido-Valdeolivas, Irene, Sakellaropoulos, Theodore, Faigle, Wolfgang, Silberberg, Gilad, Masso, Mar, Stridh, Pernilla, Behrens, Janina, Olsson, Tomas, Martin, Roland, Paul, Friedemann, Alexopoulos, Leonidas G., Saez-Rodriguez, Julio, Tegner, Jesper, Villoslada, Pablo

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Prediction of combination therapies based on topological modeling of the immune signaling network in multiple sclerosis von Bernardo-Faura, Marti, Rinas, Melanie, Wirbel, Jakob, Pertsovskaya, Inna, Pliaka, Vicky, Messinis, Dimitris E, Vila, Gemma, Sakellaropoulos, Theodore, Faigle, Wolfgang, Stridh, Pernilla, Behrens, Janina R, Olsson, Tomas, Martin, Roland, Paul, Friedemann, Alexopoulos, Leonidas G, Villoslada, Pablo, Saez-Rodriguez, Julio

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High spoligotype diversity within a Mycobacterium bovis population: Clues to understanding the demography of the pathogen in Europe von Rodríguez, Sabrina, Romero, Beatriz, Bezos, Javier, de Juan, Lucía, Álvarez, Julio, Castellanos, Elena, Moya, Nuria, Lozano, Francisco, González, Sergio, Sáez-Llorente, José Luis, Mateos, Ana, Domínguez, Lucas, Aranaz, Alicia

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Systematic identification of genomic markers of drug sensitivity in cancer cells von Garnett, Mathew J., Edelman, Elena J., Heidorn, Sonja J., Greenman, Chris D., Dastur, Anahita, Lau, King Wai, Greninger, Patricia, Thompson, I. Richard, Luo, Xi, Soares, Jorge, Liu, Qingsong, Iorio, Francesco, Surdez, Didier, Chen, Li, Milano, Randy J., Bignell, Graham R., Tam, Ah T., Davies, Helen, Stevenson, Jesse A., Barthorpe, Syd, Lutz, Stephen R., Kogera, Fiona, Lawrence, Karl, McLaren-Douglas, Anne, Mitropoulos, Xeni, Mironenko, Tatiana, Thi, Helen, Richardson, Laura, Zhou, Wenjun, Jewitt, Frances, Zhang, Tinghu, O’Brien, Patrick, Boisvert, Jessica L., Price, Stacey, Hur, Wooyoung, Yang, Wanjuan, Deng, Xianming, Butler, Adam, Choi, Hwan Geun, Chang, Jae Won, Baselga, Jose, Stamenkovic, Ivan, Engelman, Jeffrey A., Sharma, Sreenath V., Delattre, Olivier, Saez-Rodriguez, Julio, Gray, Nathanael S., Settleman, Jeffrey, Futreal, P. Andrew, Haber, Daniel A., Stratton, Michael R., Ramaswamy, Sridhar, McDermott, Ultan, Benes, Cyril H.

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A community computational challenge to predict the activity of pairs of compounds von Bansal, Mukesh, Yang, Jichen, Karan, Charles, Menden, Michael P, Costello, James C, Tang, Hao, Xiao, Guanghua, Li, Yajuan, Allen, Jeffrey, Zhong, Rui, Chen, Beibei, Kim, Minsoo, Wang, Tao, Heiser, Laura M, Realubit, Ronald, Mattioli, Michela, Alvarez, Mariano J, Shen, Yao, Gallahan, Daniel, Singer, Dinah, Saez-Rodriguez, Julio, Xie, Yang, Stolovitzky, Gustavo, Califano, Andrea

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NICOTIANAMINE SYNTHASE activity affects nucleolar iron accumulation and impacts rDNA silencing and RNA methylation in Arabidopsis von Montacié, Charlotte, Riondet, Christophe, Wei, Lili, Darrière, Tommy, Weiss, Alizée, Pontvianne, Frédéric, Escande, Marie-Line, de Bures, Anne, Jobet, Edouard, Barbarossa, Adrien, Carpentier, Marie-Christine, Aarts, Mark G M, Attina, Aurore, Hirtz, Christophe, David, Alexandre, Marchand, Virginie, Motorin, Yuri, Curie, Catherine, Mari, Stéphane, Reichheld, Jean-Philippe, Sáez-Vásquez, Julio

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Phosphoproteomics of primary AML patient samples reveals rationale for AKT combination therapy and p53 context to overcome selinexor resistance von Emdal, Kristina B., Palacio-Escat, Nicolàs, Wigerup, Caroline, Eguchi, Akihiro, Nilsson, Helén, Bekker-Jensen, Dorte B., Rönnstrand, Lars, Kazi, Julhash U., Puissant, Alexandre, Itzykson, Raphaël, Saez-Rodriguez, Julio, Masson, Kristina, Blume-Jensen, Peter, Olsen, Jesper V.

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Mapping rRNA 2'-O-methylations and identification of C/D snoRNAs in Arabidopsis thaliana plants von Azevedo-Favory, J., Gaspin, C., Ayadi, L., Montacié, C., Marchand, V., Jobet, E., Rompais, M., Carapito, C., Motorin, Y., Sáez-Vásquez, J.

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T cell depletion increases humoral response by favoring T follicular helper cells expansion von Gassen, Rodrigo Benedetti, Borges, Thiago J., Pérez‐Sáez, María José, Zhang, Hengcheng, Al Jurdi, Ayman, Llinàs‐Mallol, Laura, Aoyama, Bruno, Lima, Maurício, Pascual, Julio, Sage, Peter T., Murakami, Naoka, Riella, Leonardo V.

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