FunMappOne: a tool to hierarchically organize and visually navigate functional gene annotations in multiple experiments von Scala, Giovanni, Serra, Angela, Marwah, Veer Singh, Saarimäki, Laura Aliisa, Greco, Dario

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Manually curated transcriptomics data collection for toxicogenomic assessment of engineered nanomaterials von Saarimäki, Laura Aliisa, Federico, Antonio, Lynch, Iseult, Papadiamantis, Anastasios G., Tsoumanis, Andreas, Melagraki, Georgia, Afantitis, Antreas, Serra, Angela, Greco, Dario

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Expanding adverse outcome pathways towards one health models for nanosafety von Saarimäki, Laura Aliisa, del Giudice, Giusy, Greco, Dario

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A curated gene and biological system annotation of adverse outcome pathways related to human health von Saarimäki, Laura Aliisa, Fratello, Michele, Pavel, Alisa, Korpilähde, Seela, Leppänen, Jenni, Serra, Angela, Greco, Dario

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A Network Toxicology Approach for Mechanistic Modelling of Nanomaterial Hazard and Adverse Outcomes von del Giudice, Giusy, Serra, Angela, Pavel, Alisa, Torres Maia, Marcella, Saarimäki, Laura Aliisa, Fratello, Michele, Federico, Antonio, Alenius, Harri, Fadeel, Bengt, Greco, Dario

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Advancing chemical safety assessment through an omics-based characterization of the test system-chemical interaction von del Giudice, Giusy, Migliaccio, Giorgia, D’Alessandro, Nicoletta, Saarimäki, Laura Aliisa, Torres Maia, Marcella, Annala, Maria Emilia, Leppänen, Jenni, Mӧbus, Lena, Pavel, Alisa, Vaani, Maaret, Vallius, Anna, Ylä‐Outinen, Laura, Greco, Dario, Serra, Angela

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Characterization of ENM Dynamic Dose-Dependent MOA in Lung with Respect to Immune Cells Infiltration von Serra, Angela, del Giudice, Giusy, Kinaret, Pia Anneli Sofia, Saarimäki, Laura Aliisa, Poulsen, Sarah Søs, Fortino, Vittorio, Halappanavar, Sabina, Vogel, Ulla, Greco, Dario

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BMDx: a graphical Shiny application to perform Benchmark Dose analysis for transcriptomics data von Serra, Angela, Saarimäki, Laura Aliisa, Fratello, Michele, Marwah, Veer Singh, Greco, Dario

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Nanomaterial grouping: Unraveling the relationship of induced mechanisms and potency at a temporal scale von Maia, Marcella Torres, Fratello, Michele, del Giudice, Giusy, Saarimäki, Laura Aliisa, Möbus, Lena, Serra, Angela, Greco, Dario

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ESPERANTO: a GLP-field sEmi-SuPERvised toxicogenomics metadAta curatioN TOol von Di Lieto, Emanuele, Serra, Angela, Inkala, Simo Iisakki, Saarimäki, Laura Aliisa, del Giudice, Giusy, Fratello, Michele, Hautanen, Veera, Annala, Maria, Federico, Antonio, Greco, Dario

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Biomarkers of nanomaterials hazard from multi-layer data von Fortino, Vittorio, Kinaret, Pia Anneli Sofia, Fratello, Michele, Serra, Angela, Saarimäki, Laura Aliisa, Gallud, Audrey, Gupta, Govind, Vales, Gerard, Correia, Manuel, Rasool, Omid, Ytterberg, Jimmy, Monopoli, Marco, Skoog, Tiina, Ritchie, Peter, Moya, Sergio, Vázquez-Campos, Socorro, Handy, Richard, Grafström, Roland, Tran, Lang, Zubarev, Roman, Lahesmaa, Riitta, Dawson, Kenneth, Loeschner, Katrin, Larsen, Erik Husfeldt, Krombach, Fritz, Norppa, Hannu, Kere, Juha, Savolainen, Kai, Alenius, Harri, Fadeel, Bengt, Greco, Dario

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NanoSolveIT Project: Driving nanoinformatics research to develop innovative and integrated tools for in silico nanosafety assessment von Afantitis, Antreas, Melagraki, Georgia, Isigonis, Panagiotis, Tsoumanis, Andreas, Varsou, Dimitra Danai, Valsami-Jones, Eugenia, Papadiamantis, Anastasios, Ellis, Laura-Jayne A., Sarimveis, Haralambos, Doganis, Philip, Karatzas, Pantelis, Tsiros, Periklis, Liampa, Irene, Lobaskin, Vladimir, Greco, Dario, Serra, Angela, Kinaret, Pia Anneli Sofia, Saarimäki, Laura Aliisa, Grafström, Roland, Kohonen, Pekka, Nymark, Penny, Willighagen, Egon, Puzyn, Tomasz, Rybinska-Fryca, Anna, Lyubartsev, Alexander, Alstrup Jensen, Keld, Brandenburg, Jan Gerit, Lofts, Stephen, Svendsen, Claus, Harrison, Samuel, Maier, Dieter, Tamm, Kaido, Jänes, Jaak, Sikk, Lauri, Dusinska, Maria, Longhin, Eleonora, Rundén-Pran, Elise, Mariussen, Espen, El Yamani, Naouale, Unger, Wolfgang, Radnik, Jörg, Tropsha, Alexander, Cohen, Yoram, Leszczynski, Jerzy, Ogilvie Hendren, Christine, Wiesner, Mark, Winkler, David, Suzuki, Noriyuki, Yoon, Tae Hyun, Choi, Jang-Sik, Sanabria, Natasha, Gulumian, Mary, Lynch, Iseult

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Identification of a Gene Signature Predicting (Nano)Particle-Induced Adverse Lung Outcome in Rats von Valentino, Sarah Amandine, Seidel, Carole, Lorcin, Mylène, Sébillaud, Sylvie, Wolff, Henrik, Grossmann, Stéphane, Viton, Stéphane, Nunge, Hervé, Saarimäki, Laura Aliisa, Greco, Dario, Cosnier, Frédéric, Gaté, Laurent

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Toxicogenomics Data for Chemical Safety Assessment and Development of New Approach Methodologies: An Adverse Outcome Pathway‐Based Approach von Saarimäki, Laura Aliisa, Morikka, Jack, Pavel, Alisa, Korpilähde, Seela, del Giudice, Giusy, Federico, Antonio, Fratello, Michele, Serra, Angela, Greco, Dario

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The in vitro immunomodulatory effect of multi-walled carbon nanotubes by multilayer analysis von Hautanen, Veera, Morikka, Jack, Saarimäki, Laura Aliisa, Bisenberger, Jan, Toimela, Tarja, Serra, Angela, Greco, Dario

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TinderMIX: Time-dose integrated modelling of toxicogenomics data von Serra, Angela, Fratello, Michele, del Giudice, Giusy, Saarimäki, Laura Aliisa, Paci, Michelangelo, Federico, Antonio, Greco, Dario

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Nextcast: A software suite to analyse and model toxicogenomics data von Serra, Angela, Saarimäki, Laura Aliisa, Pavel, Alisa, del Giudice, Giusy, Fratello, Michele, Cattelani, Luca, Federico, Antonio, Laurino, Omar, Marwah, Veer Singh, Fortino, Vittorio, Scala, Giovanni, Sofia Kinaret, Pia Anneli, Greco, Dario

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CompSafeNano project: NanoInformatics approaches for safe-by-design nanomaterials von Zouraris, Dimitrios, Mavrogiorgis, Angelos, Tsoumanis, Andreas, Saarimäki, Laura Aliisa, del Giudice, Giusy, Federico, Antonio, Serra, Angela, Greco, Dario, Rouse, Ian, Subbotina, Julia, Lobaskin, Vladimir, Jagiello, Karolina, Ciura, Krzesimir, Judzinska, Beata, Mikolajczyk, Alicja, Sosnowska, Anita, Puzyn, Tomasz, Gulumian, Mary, Wepener, Victor, Martinez, Diego S.T., Petry, Romana, El Yamani, Naouale, Rundén-Pran, Elise, Murugadoss, Sivakumar, Shaposhnikov, Sergey, Minadakis, Vasileios, Tsiros, Periklis, Sarimveis, Harry, Longhin, Eleonora Marta, SenGupta, Tanima, Olsen, Ann-Karin Hardie, Skakalova, Viera, Hutar, Peter, Dusinska, Maria, Papadiamantis, Anastasios G., Gheorghe, L. Cristiana, Reilly, Katie, Brun, Emilie, Ullah, Sami, Cambier, Sebastien, Serchi, Tommaso, Tämm, Kaido, Lorusso, Candida, Dondero, Francesco, Melagrakis, Evangelos, Fraz, Muhammad Moazam, Melagraki, Georgia, Lynch, Iseult, Afantitis, Antreas

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Microarray Data Preprocessing: From Experimental Design to Differential Analysis von Federico, Antonio, Saarimäki, Laura Aliisa, Serra, Angela, del Giudice, Giusy, Kinaret, Pia Anneli Sofia, Scala, Giovanni, Greco, Dario

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Unmasking metabolic disruptors: The NEMESIS project's quest for Novel Biomarkers, Evidence on Adverse Effects, and Efficient Methodologies von Hakomäki, Henriikka, Pitkänen, Sini, Levonen, Anna-Liisa, Honkakoski, Paavo, Greco, Dario, Saarimäki, Laura Aliisa, Viegas, Susana, Godinho, Cristina, Fyhrquist, Nanna, Wincent, Emma, Lauschke, Volker M, Hukkanen, Janne, Hakkola, Jukka, Vallier, Ludovic, Fortino, Vittorio, Afantitis, Antreas, Sawatani, Toshiaki, Guzman, Tereso J, Cnop, Miriam, Nawrot, Tim, Harlid, Sophia, Vinnars, Marie-Therese, Tardon, Adonina, Grimalt, Joan O, Küblbeck, Jenni, Rysä, Jaana

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